Plant FIBer expression Database

Lus10004782 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54310 48 / 8e-07 unknown protein
AT2G38430 42 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003276
[exp]
54 / 1e-08 AT2G38430 158 / 1e-44 unknown protein
Lus10030356
[exp]
0 / 1 AT2G38430 225 / 6e-70 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G030300
[exp]
55 / 2e-09 AT2G38430 313 / 6e-104 unknown protein
Potri.019G029800
[exp]
55 / 4e-09 AT2G38430 305 / 8e-101 unknown protein
Potri.019G029900
[exp]
55 / 4e-09 AT2G38430 311 / 3e-103 unknown protein
Potri.019G030200
[exp]
54 / 7e-09 AT2G38430 275 / 6e-89 unknown protein
PFAM info
Representative CDS sequence
>Lus10004782 pacid=23140499 polypeptide=Lus10004782 locus=Lus10004782.g ID=Lus10004782.BGIv1.0 annot-version=v1.0
ATGAGCAACAGCTACCCTAATGCTCACATGGGTGGGCCACAACATCAAGATGCTGTTGGTCGGCCCAATTACTTCGGTGCCGGACCAGACATTAAGACGA
CGGCCCAACTTGATGTTCTCGTAGCTATGTTGAGGACTGAAATGGGGTCTCAGAGATTGAAACTTATCAATAAGCCTTCACTAGTTGCTAGCTTTGGCGA
TATCAATTGTCTGATAGCAGACAACCTGGTGAAGCTCTCCCCTGCAAATGTACTCTCGGAGAAGACAAAACCTTCAACTACACAAGGCATGCATGTTTCT
GTTGAATTGAACCCAGTGAGGCAGATTAAAATGGATATATCGTGTCTCAATAAAGATGTAGATATCTGGCTGATGCTATGCTTCAAGAGGATCTTGACAG
CCCTGACAGAACAGGGAGTGGACTCTGAATACGTATGTAACTTGCTTAAAGACAACTTAAGACTGATATGGTTGCAGTTCTCGTCCTGGGAGAGATTCCC
TTGA
AA sequence
>Lus10004782 pacid=23140499 polypeptide=Lus10004782 locus=Lus10004782.g ID=Lus10004782.BGIv1.0 annot-version=v1.0
MSNSYPNAHMGGPQHQDAVGRPNYFGAGPDIKTTAQLDVLVAMLRTEMGSQRLKLINKPSLVASFGDINCLIADNLVKLSPANVLSEKTKPSTTQGMHVS
VELNPVRQIKMDISCLNKDVDIWLMLCFKRILTALTEQGVDSEYVCNLLKDNLRLIWLQFSSWERFP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G54310 unknown protein Lus10004782
[exp]
0 1
Lus10003272
[exp]
4.7 0.9630
AT1G67623 F-box family protein (.1) Lus10030128
[exp]
4.8 0.9312
AT3G52470 Late embryogenesis abundant (L... Lus10000157
[exp]
5.4 0.8833
Lus10010826
[exp]
6.6 0.9630
Lus10022108
[exp]
8.1 0.9630
AT2G36780 UDP-Glycosyltransferase superf... Lus10023893
[exp]
9.4 0.9630
AT1G11040 HSP40/DnaJ peptide-binding pro... Lus10025682
[exp]
10.5 0.9630
AT3G47090 Leucine-rich repeat protein ki... Lus10028479
[exp]
11.5 0.9630
AT1G66370 MYB ATMYB113 myb domain protein 113 (.1) Lus10042522
[exp]
12.3 0.7844
Lus10030783
[exp]
12.4 0.9630

Lus10004782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.