Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78690 353 / 2e-123 Phospholipid/glycerol acyltransferase family protein (.1) AT3G05510 134 / 4e-37 Phospholipid/glycerol acyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004768 [exp] 147 / 3e-45 AT1G78690 99 / 5e-27 Phospholipid/glycerol acyltransferase family protein (.1) Lus10020650 [exp] 141 / 1e-38 AT3G05510 438 / 1e-150 Phospholipid/glycerol acyltransferase family protein (.1.2) Lus10029891 [exp] 102 / 2e-24 AT3G05510 255 / 1e-79 Phospholipid/glycerol acyltransferase family protein (.1.2) Lus10003105 [exp] 79 / 3e-18 AT1G78690 67 / 1e-14 Phospholipid/glycerol acyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G146800 [exp] 403 / 4e-143 AT1G78690 380 / 9e-134 Phospholipid/glycerol acyltransferase family protein (.1) Potri.005G025400 [exp] 137 / 1e-37 AT3G05510 529 / 0.0 Phospholipid/glycerol acyltransferase family protein (.1.2) Potri.006G183700 [exp] 40 / 0.001 AT4G30580 388 / 2e-134 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10004783 pacid=23140481 polypeptide=Lus10004783 locus=Lus10004783.g ID=Lus10004783.BGIv1.0 annot-version=v1.0 ATGGCTGGGATTACAAGGAATGCAGTGTTTGTGACCGTCGGTGCCTTTGCTAAGGCAGTGACGAGTCTTCTGAACAATACATCAGTCCACAATGCAGACA CTCTACTTCGCCTAGTTCGATCTCGGCCGCCTGGTGTACCTCTCATCACTGTTAGCAATCACATGTCAACGTTAGATGATCCTCTGATGTGGGGATTCAA GGGATTCCCAATCATGAATGCGAAATTGTTTCGATGGGTATTAGCTGCTGAAGACATCTGTTTCAGGAATTCTTTTCATTCTTACTTCTTTCGCATGGGG AAATGTATTCCCATTACAAGAGGTGGTGGAATTTATCAAAGCCACATGAATGAAGCTCTTCAGCGCTTGAGCAATGGTGATTGGCTGCACACATTCCCTG AGGGAAAGGTCAACCAAGAAATTGGACCTATAAGACGATTGAAATGGGGAACTGCCAGTCTCATCGTCCGTGCCCCTGTTACACCGATAGTATTACCCAT TGTTCATCGTGGCTTTCAAGAGGTGATGCCAGAGAACTACCTATTTGGCAAGAGGCCCCGTGTCCCCTTGAGTAATAAGAACATCGACATAATCGTAGGC GAGCCAATTGAGTTCGACATCCCTAAACTATGCAGCGAAGCAGCTTCTACGTCGCAGAGCTTGTCCTTCCCCACATTCGGATGGCCCAAATTGTCTCGTT ATGGTCTGGACGAAGCTGCACAGAAATGTCTGTACATGAATATTTCAGAGCAAATTCGAACTGCGATGCAGAAATTACTGAACCACACAAGTTGA
AA sequence Show only first row Show all	>Lus10004783 pacid=23140481 polypeptide=Lus10004783 locus=Lus10004783.g ID=Lus10004783.BGIv1.0 annot-version=v1.0 MAGITRNAVFVTVGAFAKAVTSLLNNTSVHNADTLLRLVRSRPPGVPLITVSNHMSTLDDPLMWGFKGFPIMNAKLFRWVLAAEDICFRNSFHSYFFRMG KCIPITRGGGIYQSHMNEALQRLSNGDWLHTFPEGKVNQEIGPIRRLKWGTASLIVRAPVTPIVLPIVHRGFQEVMPENYLFGKRPRVPLSNKNIDIIVG EPIEFDIPKLCSEAASTSQSLSFPTFGWPKLSRYGLDEAAQKCLYMNISEQIRTAMQKLLNHTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004783 [exp]	0	1
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10020720 [exp]	9.2	0.9052
AT5G67020			unknown protein		Lus10019249 [exp]	9.4	0.8786
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10040196 [exp]	10.7	0.8800
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10035255 [exp]	18.5	0.8990
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032632 [exp]	19.7	0.8777
AT3G14750			unknown protein		Lus10013698 [exp]	23.2	0.7965
AT1G18900			Pentatricopeptide repeat (PPR)...		Lus10033110 [exp]	23.8	0.9043
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10023161 [exp]	29.3	0.8388
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Lus10026899 [exp]	31.9	0.8269
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	32.0	0.8636

Compare expression of checked genes

Lus10004783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.