Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22430 508 / 1e-180 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 507 / 2e-180 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 498 / 5e-177 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G42250 429 / 5e-150 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G77120 356 / 3e-121 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT1G64710 356 / 4e-121 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G43940 348 / 3e-118 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 345 / 2e-116 GroES-like zinc-binding dehydrogenase family protein (.1) AT5G24760 344 / 2e-116 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT5G63620 126 / 2e-32 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004786 [exp] 659 / 0 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000624 [exp] 646 / 0 AT1G22440 514 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10040457 [exp] 421 / 3e-146 AT5G42250 488 / 7e-173 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10023572 [exp] 386 / 7e-132 AT5G42250 439 / 1e-152 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10010506 [exp] 354 / 3e-120 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 352 / 1e-119 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029759 [exp] 351 / 4e-119 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 348 / 5e-118 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10005651 [exp] 343 / 2e-116 AT5G42250 430 / 7e-151 Zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013400 [exp] 424 / 1e-147 AT5G42250 521 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Potri.005G060000 [exp] 368 / 7e-126 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.011G152900 [exp] 366 / 2e-124 AT1G32780 545 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.007G108701 [exp] 363 / 7e-124 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 362 / 9e-124 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108601 [exp] 362 / 1e-123 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 359 / 1e-122 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 359 / 2e-122 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 358 / 6e-122 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.011G152800 [exp] 359 / 8e-122 AT1G32780 540 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10004785 pacid=23140484 polypeptide=Lus10004785 locus=Lus10004785.g ID=Lus10004785.BGIv1.0 annot-version=v1.0 ATGGATCAGAGTCAGAGCAGCAACGGATCCTCAACAATGGCTACTGCCGGCAATGTCATAAGATGCAAAGCTGCAATCTGCAGAAACCCAGGGGAGGAAC TGGTGCTGGAGGAAATCGAGGTGGACCCACCCAAAGCGTACGAAGTCCGGCTCAAAATCCTCTGCACATCACTCTGCCACACTGACGTCACCTTCTGGAA AATGAAAGCAGGACCCGTGTCGAAGTTTCCGAGAATATTGGGGCACGAGGCAGTTGGATTGGTCGAGAGCATAGGGGAAGGAGTGGCGGGATGGAAAGAA GGAGAGTTGGCGTTGCCGGTGTGCGCCCCGGACTGCGAGGAATGCAAGGACTGCAAATCGGCCAAGAGCAATATGTGCTCCAGGTTCGGGGAAAAGATGG TGGGGTTCGGGATGGCGAGGGATGGGACGAGCAGATTCCGCGACAGGAAAGGAGAACCAATTCATCATCTCCTTGGGGTTTCGAGCTTTTCGGAGTACAC GGTCGTGGACATTGTTAACCTTGTCAAGATTGGGTCTGATGTTCCCCTTGATAAGGCCTGCTTGCTCAGTTGTGGCGTCTCCACAGGAATTGGGGCAGCA TGGAAGGCGGCCGATGTGGAAGAGGGATCTACTGTTGCCATCTTTGGCCTTGGAGCCGTAGGCCTTGCGGTTGCAGAAGGAGCAAGGATACGGGGAGCAT CGAAAATCATAGGGGTCGACTTGAATCCTGCAAAGTTCGAGTTAGGGAAGACATTCGGGATAACTGACTTCGTCAACCCCACAACTATTGGGGAAAAGCT TGTAAGCGAGGTGATAAAGGAAATGACGGATGGAGGAGCTGACTATTGCTTCGAATGTATTGGGTTGGCGTCCTTGATGACCGACGCTTTCTCCAGCAGC AAACAGGGATGTGGAAAGACTATAGTCGCGGGGATAGAAATGCACGGTTCGCCACTGATAGTGAGCCCGTACGAACTTGTTAAAGGCCGAAGCATTTCCG GCACCTATTTTGGAGGATTGAAGCCCAAGACTGACATTCCAATGCTTGCCAAGAAATATGTGGACAAGGAGCTGAACTTGGAGTCGTTTATAACACACGA AGTTGGATTCAAAGACATCAACAAAGCATTCGAGCTTTTGTCGGAAGGGAAGAGCGTACGATGCCTTATATGGATGGATTCCAATAACTAG
AA sequence Show only first row Show all	>Lus10004785 pacid=23140484 polypeptide=Lus10004785 locus=Lus10004785.g ID=Lus10004785.BGIv1.0 annot-version=v1.0 MDQSQSSNGSSTMATAGNVIRCKAAICRNPGEELVLEEIEVDPPKAYEVRLKILCTSLCHTDVTFWKMKAGPVSKFPRILGHEAVGLVESIGEGVAGWKE GELALPVCAPDCEECKDCKSAKSNMCSRFGEKMVGFGMARDGTSRFRDRKGEPIHHLLGVSSFSEYTVVDIVNLVKIGSDVPLDKACLLSCGVSTGIGAA WKAADVEEGSTVAIFGLGAVGLAVAEGARIRGASKIIGVDLNPAKFELGKTFGITDFVNPTTIGEKLVSEVIKEMTDGGADYCFECIGLASLMTDAFSSS KQGCGKTIVAGIEMHGSPLIVSPYELVKGRSISGTYFGGLKPKTDIPMLAKKYVDKELNLESFITHEVGFKDINKAFELLSEGKSVRCLIWMDSNN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004785 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10035629 [exp]	2.2	0.9416
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	2.2	0.9749
AT4G16260			Glycosyl hydrolase superfamily...		Lus10037749 [exp]	2.4	0.9615
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10037209 [exp]	3.0	0.9564
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10008579 [exp]	3.5	0.9178
AT1G45688			unknown protein		Lus10034926 [exp]	6.6	0.8602
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	7.2	0.9455
AT1G26380			FAD-binding Berberine family p...		Lus10021289 [exp]	7.7	0.8700
AT3G62890			Pentatricopeptide repeat (PPR)...		Lus10033544 [exp]	8.0	0.8971
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	8.5	0.9306

Compare expression of checked genes

Lus10004785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.