Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22430 500 / 5e-178 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 496 / 2e-176 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 494 / 1e-175 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G42250 435 / 2e-152 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G77120 366 / 2e-125 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT1G64710 364 / 3e-124 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 354 / 2e-120 GroES-like zinc-binding dehydrogenase family protein (.1) AT5G43940 353 / 2e-120 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G24760 343 / 2e-116 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT5G63620 132 / 1e-34 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004785 [exp] 659 / 0 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000624 [exp] 639 / 0 AT1G22440 514 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10040457 [exp] 427 / 6e-149 AT5G42250 488 / 7e-173 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10023572 [exp] 389 / 4e-133 AT5G42250 439 / 1e-152 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10010506 [exp] 371 / 3e-127 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 369 / 1e-126 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029759 [exp] 368 / 4e-126 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 365 / 7e-125 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10005651 [exp] 347 / 6e-118 AT5G42250 430 / 7e-151 Zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013400 [exp] 430 / 3e-150 AT5G42250 521 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Potri.005G060000 [exp] 382 / 3e-131 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108601 [exp] 380 / 5e-131 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 380 / 1e-130 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 379 / 4e-130 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 376 / 3e-129 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 375 / 7e-129 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 372 / 7e-128 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.011G152900 [exp] 371 / 1e-126 AT1G32780 545 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.011G152800 [exp] 365 / 3e-124 AT1G32780 540 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10004786 pacid=23140485 polypeptide=Lus10004786 locus=Lus10004786.g ID=Lus10004786.BGIv1.0 annot-version=v1.0 ATGACGACTACCGCCGGCAGAGTCATAAGATGCAAAGCTGCAATCTGCAGAAACCCGGGGGAAGAACTAGTACTGGAAGAAATCGAGGTGGACCCACCGA AAGCATACGAAGTCCGGCTCAAAATCCTCTGCACTTCACTCTGCCACAGTGACGTCACCTTCTGGAAGATGAAACCGGGACCCGTGTCGAAGTTTCCGAG AATCTTGGGGCACGAGGCAGTTGGATTGGTCGAGAGCGTCGGGGAAGGAGTGGACGCATGGAAAGAAGGAGAGTTGGCGTTGCCGGTGTTCGCCTCTGAT TGCGAGGAATGCAGGGACTGCAAATCGACCAATAGCAACATCTGCTCTAGGTTCGGGCGGAGAACCGATGGGTTCGGGATGGTTAGGGACGGGACGAGCA GATTTCGAGACGGGAAAGGAGAAACAATTCATCATCTGCTCGGTGTTTCGAGCTTTTCGGAGTATACAGTTGTGGACATGGTTAACCTTGTGAAGATTGG GTCCGATTTTCCTCTCGATAAGGCCTGCTTGCTTAGTTGTGGCGTCTCCACAGGGGTGGGGGCAGCATGGAAGGCGGCAGAGGTGGAACAAGGATCTACT GTTGCCATCTTTGGTCTTGGAGCCGTAGGCCTTGCGGTCGCAGAAGGAGCAAGAATACGAGGAGCATCCAAAATCATAGGGATCGATTTGAATCCTGCGA AGTTCGAGTTAGGGAAGAAATTTGGGATAACTGACTTCGTCAACCCTACAACTATTGGGGAAAAGCGTGTAAGCGAGGTTATAAAGGAAATGACGGATGG AGGAGCTGATTATTGTTTTGAATGTATTGGTTTGGCTTCCTTGATGGCTGACGCTTTCTCTAGCAGCAGAGAGGGATGGGGAAAGACTATAGTAGTGGGG ATAGAAATGCACGGGTCGCCACTAGTAGTGAGCCCGTACGAACTTGTTAGAGGTCGAAGCATTTCCGGCACCTATTTTGGAGGATTGAAACCCAAAACCG ATATTCCGATGCTTGCCAAGAAATACGTGGACAAGGAGTTGAATTTGGAGTCGTTTATAACACATGAGGTGGGATTCAAAGACATCAACAAAGCATTTGA GCTTTTGTCGGAAGGGAAGAGCCTACGATGCCTAATATGGCTGAATGCCAATAACTAG
AA sequence Show only first row Show all	>Lus10004786 pacid=23140485 polypeptide=Lus10004786 locus=Lus10004786.g ID=Lus10004786.BGIv1.0 annot-version=v1.0 MTTTAGRVIRCKAAICRNPGEELVLEEIEVDPPKAYEVRLKILCTSLCHSDVTFWKMKPGPVSKFPRILGHEAVGLVESVGEGVDAWKEGELALPVFASD CEECRDCKSTNSNICSRFGRRTDGFGMVRDGTSRFRDGKGETIHHLLGVSSFSEYTVVDMVNLVKIGSDFPLDKACLLSCGVSTGVGAAWKAAEVEQGST VAIFGLGAVGLAVAEGARIRGASKIIGIDLNPAKFELGKKFGITDFVNPTTIGEKRVSEVIKEMTDGGADYCFECIGLASLMADAFSSSREGWGKTIVVG IEMHGSPLVVSPYELVRGRSISGTYFGGLKPKTDIPMLAKKYVDKELNLESFITHEVGFKDINKAFELLSEGKSLRCLIWLNANN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004786 [exp]	0	1
AT3G18430			Calcium-binding EF-hand family...		Lus10042708 [exp]	1.0	0.9698
AT2G15020			unknown protein		Lus10013880 [exp]	1.4	0.9695
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Lus10001463 [exp]	1.7	0.9596
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	4.0	0.9582
AT3G52740			unknown protein		Lus10020614 [exp]	4.5	0.9548
AT3G47570			Leucine-rich repeat protein ki...		Lus10040186 [exp]	4.6	0.9082
AT1G79510			Uncharacterized conserved prot...		Lus10009597 [exp]	5.5	0.9505
AT5G14860			UDP-Glycosyltransferase superf...		Lus10022222 [exp]	7.2	0.9191
AT1G76110	ARID		HMG (high mobility group) box ...		Lus10021228 [exp]	7.9	0.8950
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	8.4	0.9449

Compare expression of checked genes

Lus10004786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.