Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22120 313 / 9e-105 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008366 [exp] 626 / 0 AT5G22120 333 / 2e-112 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G216500 [exp] 352 / 3e-120 AT5G22120 363 / 2e-124 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004788 pacid=23168919 polypeptide=Lus10004788 locus=Lus10004788.g ID=Lus10004788.BGIv1.0 annot-version=v1.0 ATGGAGAACGGAAACGCCGACAGATCACAGCATGATTCCGAGATCAATCGGAGCTGGAGCGAGGTGGTAGAGGATCTTATATCTTCTGGTGACACTGACG CCGCCATCTCTCTCCTGGAATCCGTAGTCTCCCAACTCCAGCTCCTCACTCCACCTTCTGAGGTAGTGAATCTCCAATTGGCTTCCGCTCTCACTGAATT AGCCACCCTCTACTCATCCAAGGACTTCTCCCTCAAATCTGACGAACTTCACTCTCGGGCCTCACTCCTCAAGCACCAGGCTCTTCACTCTAACCTTACT GTGCATGGGGAGAAGAGCGTACAGTCAGAGGTTGATCAAAATTTGAACTCCAAGGCTGCTGATTCTGGCGAAGGGCCTGTTGCGAAATCCTCACTTCTTT CTGCTTCCATTGATGAAGCTTCAGATGATGACTGGGAAGCTGTGGCAGATCGTGAACCCAGTGAATTGTTCCCTGCCAACTCTCCACCAAGTGTGTCAAA AATTTCAGATAAAGATAAGGCGGATCAAAACCCTAAGCGTCGTGGACGAGGCACATTCTCTTACAAGAAAGATAGATTGTACAGTGATCAGCAATCTGAT GGATCTCTTTCTGATGATTCAGAGAATGATATTGTGGGTGAAATTGGACAGCCGAGTAGAAAATCAAGACAAGCTACGTTTGGTACCAATCATGTGCTAG TCCTGGCTGACTTTCCTCCAAGCACTAAAACAACGGATCTAGAAAGACTTTTATATGACTTCAAAGATCGTGGAGTCTCAATTCGCTGGGTTAATGATAC AACCGCTCTTGCAGTTTTTAGAACCCCATCCATTGCGTTGGAGGCCCACAACTCTATAAAGTTTCCTTTCACTGTTCGTGTTCTGAATGAGGATGATATC CGTACGGGATCAATATCAACCACAGACTTGGAAGCTCCACAGCAAAGGCCGAAAACATCAACAAGAACAGCTCAAAGGCTGATAGCACAAGGTATGGGAC TGAAGTTGCCTTCCAGTAGCTTCGGTTCAAGAGATCTGAAGAAGCAGGAAGAAGCTAGAAAGAATAGAATAGTTACGAGGCAAAAGCTGAGGGATGATGC ATGGGGTGACGACTAA
AA sequence Show only first row Show all	>Lus10004788 pacid=23168919 polypeptide=Lus10004788 locus=Lus10004788.g ID=Lus10004788.BGIv1.0 annot-version=v1.0 MENGNADRSQHDSEINRSWSEVVEDLISSGDTDAAISLLESVVSQLQLLTPPSEVVNLQLASALTELATLYSSKDFSLKSDELHSRASLLKHQALHSNLT VHGEKSVQSEVDQNLNSKAADSGEGPVAKSSLLSASIDEASDDDWEAVADREPSELFPANSPPSVSKISDKDKADQNPKRRGRGTFSYKKDRLYSDQQSD GSLSDDSENDIVGEIGQPSRKSRQATFGTNHVLVLADFPPSTKTTDLERLLYDFKDRGVSIRWVNDTTALAVFRTPSIALEAHNSIKFPFTVRVLNEDDI RTGSISTTDLEAPQQRPKTSTRTAQRLIAQGMGLKLPSSSFGSRDLKKQEEARKNRIVTRQKLRDDAWGDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22120			unknown protein		Lus10004788 [exp]	0	1
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Lus10027766 [exp]	2.2	0.7812
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	4.2	0.8060
					Lus10008068 [exp]	4.6	0.7734
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	4.9	0.8093
AT5G52030			TraB family protein (.1.2)		Lus10015005 [exp]	6.0	0.7772
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10032778 [exp]	6.2	0.8028
AT3G51150			ATP binding microtubule motor ...		Lus10015448 [exp]	7.4	0.7438
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10034065 [exp]	8.5	0.7185
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10004058 [exp]	9.2	0.7301
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10001106 [exp]	9.6	0.7997

Compare expression of checked genes

Lus10004788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.