Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30695 97 / 1e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008364 [exp] 323 / 9e-113 AT2G30695 78 / 1e-17 unknown protein Lus10008363 [exp] 86 / 8e-20 AT2G30695 166 / 1e-51 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G125600 [exp] 211 / 2e-68 AT2G30695 94 / 2e-23 unknown protein Potri.013G125500 [exp] 91 / 6e-22 AT2G30695 167 / 3e-52 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05697 [flax] [poplar] Trigger_N Bacterial trigger factor protein (TF)
Representative CDS sequence Show only first row Show all	>Lus10004790 pacid=23168918 polypeptide=Lus10004790 locus=Lus10004790.g ID=Lus10004790.BGIv1.0 annot-version=v1.0 ATGGAAACTAAGTTTGTTTCCTCACAGCTTCAACAGCTCCCCACTATGATTTCTGCTTCTGGATACAAGAATCTGGCTTGCAATCGCTCGACAATATCCT TCAGTTTTTGTAACACAGGACAGCAACGAGTCAGCAACAGGAGGATAGTGTTCTCTTCACGGTTATTTAGTAATAGCGTCAGGCCTATTTCTGCTACGGA CTCAGGTGTGGAAACATCAATTTCAGATGGCAAGGACAGTGACATAGCTGTGAAAGATGCTAAAGTAGTTGTAGAATCGCAAGACGAAAACAGCATTCAG CTCAGAGTTGATTTGGCGGGAGATGTAACAGAAAAAGTTTTCGGCAAGGTCTTGAGAAATTTGGCTCTTACAGCACCACCAATCCCAGGATTTCGCAGAC AAAAGGGAGGAAAGACGACTCGGGTTCCTAGGGAGTTCCTCATCCAGATCCTTGGCAAAGAGCGGGTAACCAACTTTGTGATTCAAGAAATAGTCAGCGT CACACTGGCTGATTATGCAACCAAGGCAAGTGCTATATGTCCATGCTTAGAAGCAAGTAGTATGTGTTTGAATCGTGTTTACTTTTTCTGTCATGGGACT GGTGAAAATCTGAAAGTGAAGGAGAACAAAGTGACTACAACTCAGACAGCAGAAGAGCTGAAGAAGCTGTTTGAACCAGGGAAAGAATTTGGGTTCAATG CCACTCTGGAGCTTGAACCCATTGTTGCAACTGAAGCTGAAACTTAG
AA sequence Show only first row Show all	>Lus10004790 pacid=23168918 polypeptide=Lus10004790 locus=Lus10004790.g ID=Lus10004790.BGIv1.0 annot-version=v1.0 METKFVSSQLQQLPTMISASGYKNLACNRSTISFSFCNTGQQRVSNRRIVFSSRLFSNSVRPISATDSGVETSISDGKDSDIAVKDAKVVVESQDENSIQ LRVDLAGDVTEKVFGKVLRNLALTAPPIPGFRRQKGGKTTRVPREFLIQILGKERVTNFVIQEIVSVTLADYATKASAICPCLEASSMCLNRVYFFCHGT GENLKVKENKVTTTQTAEELKKLFEPGKEFGFNATLELEPIVATEAET

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30695			unknown protein		Lus10004790 [exp]	0	1
AT2G30695			unknown protein		Lus10008363 [exp]	1.7	0.9569
AT3G25470			bacterial hemolysin-related (....		Lus10008746 [exp]	2.8	0.9627
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10001861 [exp]	3.6	0.9677
					Lus10008697 [exp]	4.9	0.9457
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10042587 [exp]	9.5	0.9549
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10008075 [exp]	9.5	0.9454
AT5G48830			unknown protein		Lus10038165 [exp]	11.0	0.9424
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	12.8	0.9257
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10039291 [exp]	13.3	0.9437
AT4G34620		SSR16	small subunit ribosomal protei...		Lus10027058 [exp]	13.6	0.9552

Compare expression of checked genes

Lus10004790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.