Plant FIBer expression Database

Lus10004791 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30695 93 / 7e-24 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008363
[exp]
209 / 6e-69 AT2G30695 166 / 1e-51 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G125500
[exp]
122 / 4e-35 AT2G30695 167 / 3e-52 unknown protein
Potri.013G125600
[exp]
54 / 9e-09 AT2G30695 94 / 2e-23 unknown protein
PFAM info
Representative CDS sequence
>Lus10004791 pacid=23168924 polypeptide=Lus10004791 locus=Lus10004791.g ID=Lus10004791.BGIv1.0 annot-version=v1.0
ATGGTGGAAGTTGGGGTAACTCCTAAAGCTTCCTTCCCGGCTTGGAACTTTACGGCAATAACATCTTTCCCCAATGTATTGAGCTCTAGTGCCCCTACCT
CATACTTTACAAGTAGCAGACCAAATAGGAATAGGAGCTCTCCACTGGTTTCTGCCTTAGTGACAGGTGAAAAGTCAGTCTTTTCTCTTTTCCTTCAATT
GCCTGCCATTTTAGACTTGTTTGCGGATTTCCAGGTCGTGAGTAACAGCACCGACGATTCCACAGTGTTGAAGATAGGCGTAGAGGTGTATGGAACGAAT
ACAAGAGCAATTTTCCGATTCCAGGGTTTCGTAGAGTTAAAGGAGGACGTTTTGTTGGAAATCCTAGGAGCTTCCAGAGTATATAAACAAGTCATTCAGA
AGGTGATAAACTCTTGTGTAGCAGAGTATGTTGACAAGCAAGGGTTACAAGTGGGTAATGATCTCAAAGTTGAGCATAGCTTCGAAGATCTTGAAGATTC
ATTCAGTCCAGGGGAGAAGTTCAACTTTGACGCACTCCTTACCCTTCATTTGAACTAG
AA sequence
>Lus10004791 pacid=23168924 polypeptide=Lus10004791 locus=Lus10004791.g ID=Lus10004791.BGIv1.0 annot-version=v1.0
MVEVGVTPKASFPAWNFTAITSFPNVLSSSAPTSYFTSSRPNRNRSSPLVSALVTGEKSVFSLFLQLPAILDLFADFQVVSNSTDDSTVLKIGVEVYGTN
TRAIFRFQGFVELKEDVLLEILGASRVYKQVIQKVINSCVAEYVDKQGLQVGNDLKVEHSFEDLEDSFSPGEKFNFDALLTLHLN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G30695 unknown protein Lus10004791
[exp]
0 1
AT3G17590 CHE1, BSH BUSHY GROWTH, transcription re... Lus10005562
[exp]
5.3 0.7679
AT1G35340 ATP-dependent protease La (LON... Lus10008251
[exp]
5.4 0.8247
AT5G13980 Glycosyl hydrolase family 38 p... Lus10036074
[exp]
6.8 0.8092
AT1G26180 unknown protein Lus10031917
[exp]
9.9 0.7668
AT1G76405 unknown protein Lus10025161
[exp]
11.6 0.7879
AT2G28230 TATA-binding related factor (T... Lus10030830
[exp]
17.2 0.7842
AT3G44190 FAD/NAD(P)-binding oxidoreduct... Lus10008365
[exp]
21.2 0.7633
AT1G27510 Protein of unknown function (D... Lus10002370
[exp]
23.1 0.7731
AT5G42520 BBR_BPC BPC6, BBR/BPC6,... ARABIDOPSIS THALIANA BASIC PEN... Lus10012389
[exp]
23.4 0.6929
AT1G52500 ATMMH-2, ATMMH-... FORMAMIDOPYRIMIDINE-DNA GLYCOS... Lus10035876
[exp]
24.2 0.7577

Lus10004791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.