Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15790 46 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008380 [exp] 65 / 2e-14 AT4G15790 122 / 5e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G024600 [exp] 49 / 9e-09 AT4G15790 152 / 3e-48 unknown protein Potri.008G207500 [exp] 49 / 1e-08 AT4G15790 147 / 2e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004794 pacid=23168925 polypeptide=Lus10004794 locus=Lus10004794.g ID=Lus10004794.BGIv1.0 annot-version=v1.0 ATGGCCGACACGGACGCCTCCTCTGCTACTGTTCTGCCTCCAGCTCCCGCTCCTCTAGCTCCGGAGCTCACCGACTTGAAGAAGTCGCTGAATGACGAAG TGGAACAACTTCGTACGGAATTTCAAGAACTTAGGACAACACTGCAGCAGCAACAAGATGATATATCGTCAAGCCTGAAAAATTTGGGGGTAAGTGTTGT TAAAAACTGTAGTTTCTGTTATGGTGGATTTGTAGAGAAGTTGGAAAGAAGAAAGAACGTATTTTGA
AA sequence Show only first row Show all	>Lus10004794 pacid=23168925 polypeptide=Lus10004794 locus=Lus10004794.g ID=Lus10004794.BGIv1.0 annot-version=v1.0 MADTDASSATVLPPAPAPLAPELTDLKKSLNDEVEQLRTEFQELRTTLQQQQDDISSSLKNLGVSVVKNCSFCYGGFVEKLERRKNVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15790			unknown protein		Lus10004794 [exp]	0	1
AT5G62360			Plant invertase/pectin methyle...		Lus10024596 [exp]	6.9	0.8675
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038291 [exp]	6.9	0.8660
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	7.7	0.8762
AT1G71760			unknown protein		Lus10004010 [exp]	11.8	0.8501
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10031601 [exp]	12.4	0.8396
AT5G10530			Concanavalin A-like lectin pro...		Lus10007077 [exp]	14.7	0.8468
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10019220 [exp]	15.0	0.8751
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036704 [exp]	15.6	0.8324
AT4G34380			Transducin/WD40 repeat-like su...		Lus10038296 [exp]	17.7	0.8523
					Lus10012088 [exp]	25.1	0.7807

Compare expression of checked genes

Lus10004794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.