Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43420 105 / 4e-27 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) AT1G47290 80 / 3e-18 AT3BETAHSD/D1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) AT2G26260 79 / 1e-17 AT3BETAHSD/D2 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000358 [exp] 79 / 1e-18 AT1G47290 298 / 3e-101 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) Lus10010311 [exp] 81 / 2e-18 AT2G26260 664 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10013413 [exp] 81 / 3e-18 AT2G26260 724 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G131200 [exp] 125 / 2e-34 AT2G43420 501 / 3e-174 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) Potri.006G218400 [exp] 80 / 3e-18 AT2G26260 816 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01073 [flax] [poplar] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Lus10004797 pacid=23178696 polypeptide=Lus10004797 locus=Lus10004797.g ID=Lus10004797.BGIv1.0 annot-version=v1.0 ATGTTGAATTCCCCAAATCCCAGATCTTGCGTTGTACTCGGAGGTCAAGGTTTCATCGGATTGTCTCTTATCTTGAGAATTCTCAAACATGAAAATTGGA TGATTCGGATAGCTGATTATTCAAAATCAATTGATCTTGAGCTTGTAAATATTGATGACCTTAGCGATGCCATCTCTTCTGGTCGTGTTTCTTATCACCA CATTGATGTTCGTGATCCCACTCTTATTTGTAAAGTACAAGGTGCAGAAAATGTAATCAATGCATGTAAAGATTGTAAAGTAAAGCAATTGATTTATAAT AGCGCAGCCGATGTGATATTTGATGGTTCGCATGACCTAATCGGTGTAGACGAGTCATTTTCCTGCCATGGAAAAAAAGGTGTCCAGCCTCCAAAGCTCT CTCGTATCTCGGCCCAAATAGCGGGGCCGTTAAAAACAAAAAACTGA
AA sequence Show only first row Show all	>Lus10004797 pacid=23178696 polypeptide=Lus10004797 locus=Lus10004797.g ID=Lus10004797.BGIv1.0 annot-version=v1.0 MLNSPNPRSCVVLGGQGFIGLSLILRILKHENWMIRIADYSKSIDLELVNIDDLSDAISSGRVSYHHIDVRDPTLICKVQGAENVINACKDCKVKQLIYN SAADVIFDGSHDLIGVDESFSCHGKKGVQPPKLSRISAQIAGPLKTKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43420			3-beta hydroxysteroid dehydrog...		Lus10004797 [exp]	0	1

Compare expression of checked genes

Lus10004797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.