Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43490 475 / 5e-161 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT3G59570 446 / 3e-149 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 177 / 1e-49 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 175 / 7e-49 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G28550 157 / 2e-42 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 150 / 7e-40 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G53570 122 / 2e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G41940 120 / 8e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G49350 119 / 2e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 118 / 3e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011159 [exp] 177 / 2e-49 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10043064 [exp] 178 / 3e-49 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10022905 [exp] 162 / 8e-44 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10024920 [exp] 159 / 5e-43 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 124 / 7e-30 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023237 [exp] 122 / 2e-29 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10033232 [exp] 122 / 3e-29 AT5G41940 590 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10022356 [exp] 120 / 9e-29 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027697 [exp] 100 / 5e-23 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G023200 [exp] 591 / 0 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.007G132900 [exp] 575 / 0 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.011G135300 [exp] 175 / 9e-49 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.001G419100 [exp] 171 / 4e-47 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.005G227400 [exp] 169 / 1e-46 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 125 / 2e-30 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.015G007400 [exp] 124 / 3e-30 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.003G146300 [exp] 120 / 1e-28 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 119 / 2e-28 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.018G127500 [exp] 106 / 4e-24 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10004802 pacid=23178700 polypeptide=Lus10004802 locus=Lus10004802.g ID=Lus10004802.BGIv1.0 annot-version=v1.0 ATGCATTCAAGCATTGGGACTGGTGCGCTTGCTTATGTTGTTGGGTCAAAAGTTATGGACGTCAGAACTTCATCAAAGGATGATGTGGGGGTGGAAGCTA TTGTTCAAAATAGAGAAAGCACTGACATCTTGAAGAGTTCTAGTAATTGGAATGGTAATTGCCTCAACGGCTCGTATGCACCTGGAAGAGAAAGTTCTAG TGATTCTGCGGAAATCGTTAGTGGGAGGGGTAGCAACGATAGTGCAGCATACAGCTCTTCTTATTTGAGAGCTGATTCAGGTGCACATAAGAGCAGTTTG ATGGAGAGTTGTGAAGTAGATGATGGATCACACTGTGAAGTAGGAGGTTTCTTTGATTTTCCCCCGTTGCCAGTCACAAATTTGTTTGAGAAAGTAGATG GTGATGATGATGATTATGATGATGAAGATAGTCCTGCATCAAGGCAACTGATGTCTCATGATGAGAGTATGCACAGTTTTCAAATTAATAACAATGATGC TTTGATTATGGAAACCAATGGCTCACAATCTAGAAATATACCTGGTAATAGAGACTCTGAAATTGAAATAGTTCCACATGATGGCCAAAAGACAGCATCA TGGTCGAGTAGTCAGGATTCTAAGAGGATTGAAATGAATGGGTTGACAATATCTGGTATTCAACCACTAGTGAATTCATCCCACAGAGGGCCTACTGGTG AAGATAGAGTATCTGAATGGCTTTGGACTCTGCACGGAATTGTTGTTGACGTGGTAAGAACAGACATTCATCTTGAATTCTACGAGGACAAGAAAAATTT GGCTAGAATGTCTGATATACTTGCAGTTTATGCCTGGATTGATCCTGCCACAGGTTATTGTCAAGGTATGAGTGATTTGCTGTCTCCTTTTGTTGTACTA TTCGACGACGATGCTGATGCATTTTGGTGCTTTGAGATGCTTCTAAGGAGAATGCGTGAGAACTTTCAGATGGAAGGACCAACTGGTGTGATGAAGCAAT TGCAGGCACTGTGGCACATATTAGAAGTTTCGGACAGGGAAATTTATGCACACCTGTCGCGAATAGGTGCTGAAAGCCTGCACTTTGCATTTCGGATGTT GATGGTTCTCTTCCGGCGGGAGCTATCTTTCAGTGAAACTCTTCGGATGTGGGAGATGATGTGGGCTGCGGATTTTGATGAATCTGTGGCCTGGAATCTA GAGAAAAGCTGTCTTGAGGCGCTGGTGCTACATCTTCCTCAAAACAATGAGAATGGAACAAGAACAGAAAGCACAGACACTGGTAATGACTGCCGTAAGG GAAATCCAGAAACAAAACTAGGACATAGAGAGCAGTCAAAATCTGAGATCGATGGAGCAAAGTCCACTCTGACACATCCTATATGTGGGTTCCCAAGGAA TTTTTGGTCTAAAGGTGGCCCCACGGAGATCAGCACTCTTGTGTCGTCAACTAACAATGGAGATGATGAACTGCCCGTCTTTTGTGTGGCAGCAATTCTT ATAATGAACCGTCATAAGATCATCAAAGAAACTCGGTCATTTGAGGATATGATAAAGGCAGGTGCATTACACTTCCTATTATTGTTTATGTGGGATATGG GTGGGACTCCAGTGTCATGGCGGCCTTTTCATGCTGTCTATCAAGGAACTGTGTGCCTTACCTAG
AA sequence Show only first row Show all	>Lus10004802 pacid=23178700 polypeptide=Lus10004802 locus=Lus10004802.g ID=Lus10004802.BGIv1.0 annot-version=v1.0 MHSSIGTGALAYVVGSKVMDVRTSSKDDVGVEAIVQNRESTDILKSSSNWNGNCLNGSYAPGRESSSDSAEIVSGRGSNDSAAYSSSYLRADSGAHKSSL MESCEVDDGSHCEVGGFFDFPPLPVTNLFEKVDGDDDDYDDEDSPASRQLMSHDESMHSFQINNNDALIMETNGSQSRNIPGNRDSEIEIVPHDGQKTAS WSSSQDSKRIEMNGLTISGIQPLVNSSHRGPTGEDRVSEWLWTLHGIVVDVVRTDIHLEFYEDKKNLARMSDILAVYAWIDPATGYCQGMSDLLSPFVVL FDDDADAFWCFEMLLRRMRENFQMEGPTGVMKQLQALWHILEVSDREIYAHLSRIGAESLHFAFRMLMVLFRRELSFSETLRMWEMMWAADFDESVAWNL EKSCLEALVLHLPQNNENGTRTESTDTGNDCRKGNPETKLGHREQSKSEIDGAKSTLTHPICGFPRNFWSKGGPTEISTLVSSTNNGDDELPVFCVAAIL IMNRHKIIKETRSFEDMIKAGALHFLLLFMWDMGGTPVSWRPFHAVYQGTVCLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Lus10004802 [exp]	0	1
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10014894 [exp]	1.0	0.8466
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10038176 [exp]	3.2	0.8336
AT1G06470			Nucleotide/sugar transporter f...		Lus10031370 [exp]	4.2	0.8217
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034701 [exp]	5.5	0.7363
AT5G05930		ATGC1	ARABIDOPSIS GUANYLYL CYCLASE 1...		Lus10009875 [exp]	6.5	0.7646
AT4G24015			RING/U-box superfamily protein...		Lus10023055 [exp]	7.4	0.7356
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10023406 [exp]	10.2	0.7897
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006450 [exp]	14.1	0.6979
AT3G03810		EDA30	embryo sac development arrest ...		Lus10010654 [exp]	15.0	0.7430
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10027138 [exp]	15.6	0.7936

Compare expression of checked genes

Lus10004802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.