Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73180 601 / 0 Eukaryotic translation initiation factor eIF2A family protein (.1.2) AT5G27640 84 / 8e-17 ATTIF3B1, ATEIF3B-1, EIF3B-1, TIF3B1 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) AT5G25780 79 / 2e-15 ATEIF3B-2, EIF3B-2 eukaryotic translation initiation factor 3B-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026904 [exp] 77 / 1e-14 AT5G27640 1167 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10016562 [exp] 61 / 2e-09 AT5G27640 1072 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10020098 [exp] 56 / 5e-08 AT5G27640 1108 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G126300 [exp] 627 / 0 AT1G73180 703 / 0.0 Eukaryotic translation initiation factor eIF2A family protein (.1.2) Potri.006G267500 [exp] 84 / 6e-17 AT5G27640 1087 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Potri.018G015200 [exp] 82 / 3e-16 AT5G27640 1168 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF08662 [flax] [poplar] eIF2A Eukaryotic translation initiation factor eIF2A
Representative CDS sequence Show only first row Show all	>Lus10004803 pacid=23178694 polypeptide=Lus10004803 locus=Lus10004803.g ID=Lus10004803.BGIv1.0 annot-version=v1.0 ATGCTTTTTGCATATTTTGACATCTATATAAACATCCTGATCAAGGGTCGATTGAAGGAGTTGTGGCGAACTTTGGACTCTGGAGTACTGGGAATCCTGT TAGCCGAAACTCGTGGAATACCTGTGATTTGTACTCGAGTTCGGGGATCGGACGGAGCTTGCGTATGGAACGGGCCCCCGTTCAAGGACGGCCAACCGAG TATTGAGCTTGAATACGTCCGCTGCAACAGTTCCAAGTTCAGCGAAGATGGGTCGGTGCTGATGGTTATGAAAGACGGTTCAATTATCAGCTTGTACGGT TGCAAGAACAAGTTCGAGGAGATTCGCTCTTTTGAAGTTCCTAATATCGTCTCTGCGGCTTTATCTCCCTGCGGGACTTTCCTTCAAACGTTTCAGAAGT CATCCATTCCTCAGGAGAAAAATGTTGTTTTGTGGAGGACGGAGACCGGTGATGCTGTCCACAATCACTTCCAGAAGAATTCAACCAAAGCCACTTGGCC TTCTATACGTTTTAGCTCGGACGAGACCGTTGCCTGTCGACTGGCAACCAACGAGATACAATTCTTTGATCCCAAAGATTTCTCAAAGGGGTTTGTGAAT CGCCTAAGAGTTCCAAACATTGCCGGATTTGAGCTTTCTGCTTTGCCAGGATCTCACGTTGCTACTTTTGTTCCTGAGTCTAAGGGGAGTCCAGCCAGTG TTCAGATATATCATTGTAAGAAAGAATTGCAAGATCAGCCTGTTGCTCGTCGTAGCTTTTTTCGTTGTTCCACAGTCCAGCTGCACTGGAATAGAGGTTC TACTGGACTTCTAGTCGTAGTGCAGGCTGATGTTGATAAGACCAATCAGAGTTATTATGGAGAGACTAAGCTTAACTATCTTACCACCAATGGGAGTCAC GAGGGGCTTGTCACATTGCGTAAAGAAGGGCCCATTCATGATGTTCAGTGGTCATATTGCGGTTCAAAGTTTGTTGTTATATATGGATTTCTCTGCATAG CTGGTTTTGGCAACTTACCTGGTGACATGGCATTTTGGGACTATGACGAAAAGAAACAACTTGGAACCACCAGGGCTGAATGCTCGGTGTCAAGTGAGTG GTCACCAGATGGACGCTATTTCATGACTGCTACAACAGCGCCAAGACTGCAAGTTGACAATGGGGTTAAAATTTTCCGCTACAACGGGTCACTCTTATTC AAAAAGATGTTTGATAAATTGTATCAGGCTGAATGGAGACCGGAGTCTCCAGATAAATATCCTGAACTCGTAGACATTGTCAAGTCTGTTGCTTCATTAT CAATCAAAGAAGCCAAATCACAAGGACAAGGGTCAGCAGCCCCTCGGAAACTTGAACCTCCTCCTGCAAGACCTAGTGCGTACCGCCCACCACATGCAAA GCAGGCTGCAGCCATTCAGGCAGAGGTACTACTTGATGTGGATGACCTTCAAATGAGCAAAAGTGCACTGAAGAACAAGAAGAAAAGGGAGAAACAGAAG GAGAAGAAGGCCTCCGCTACTACTTCTGAAACCGCCTAG
AA sequence Show only first row Show all	>Lus10004803 pacid=23178694 polypeptide=Lus10004803 locus=Lus10004803.g ID=Lus10004803.BGIv1.0 annot-version=v1.0 MLFAYFDIYINILIKGRLKELWRTLDSGVLGILLAETRGIPVICTRVRGSDGACVWNGPPFKDGQPSIELEYVRCNSSKFSEDGSVLMVMKDGSIISLYG CKNKFEEIRSFEVPNIVSAALSPCGTFLQTFQKSSIPQEKNVVLWRTETGDAVHNHFQKNSTKATWPSIRFSSDETVACRLATNEIQFFDPKDFSKGFVN RLRVPNIAGFELSALPGSHVATFVPESKGSPASVQIYHCKKELQDQPVARRSFFRCSTVQLHWNRGSTGLLVVVQADVDKTNQSYYGETKLNYLTTNGSH EGLVTLRKEGPIHDVQWSYCGSKFVVIYGFLCIAGFGNLPGDMAFWDYDEKKQLGTTRAECSVSSEWSPDGRYFMTATTAPRLQVDNGVKIFRYNGSLLF KKMFDKLYQAEWRPESPDKYPELVDIVKSVASLSIKEAKSQGQGSAAPRKLEPPPARPSAYRPPHAKQAAAIQAEVLLDVDDLQMSKSALKNKKKREKQK EKKASATTSETA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73180			Eukaryotic translation initiat...		Lus10004803 [exp]	0	1
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	1.7	0.9441
AT3G55410			2-oxoglutarate dehydrogenase, ...		Lus10005961 [exp]	2.0	0.9251
AT1G73930			unknown protein		Lus10032474 [exp]	6.0	0.9020
AT2G46520			cellular apoptosis susceptibil...		Lus10030241 [exp]	6.3	0.9127
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	7.1	0.9183
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10027760 [exp]	7.7	0.8973
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	7.7	0.9058
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016664 [exp]	8.5	0.8937
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029462 [exp]	10.2	0.8831
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	14.5	0.9008

Compare expression of checked genes

Lus10004803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.