Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24070 410 / 1e-143 Peroxidase superfamily protein (.1) AT2G43480 398 / 6e-139 Peroxidase superfamily protein (.1) AT5G17820 237 / 3e-76 Peroxidase superfamily protein (.1) AT3G03670 234 / 7e-75 Peroxidase superfamily protein (.1) AT5G22410 220 / 3e-69 RHS18 root hair specific 18 (.1) AT2G41480 214 / 8e-67 Peroxidase superfamily protein (.1) AT4G26010 210 / 1e-65 Peroxidase superfamily protein (.1) AT4G11290 209 / 5e-65 Peroxidase superfamily protein (.1) AT1G34510 208 / 8e-65 Peroxidase superfamily protein (.1) AT5G42180 207 / 1e-64 PER64 peroxidase 64, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025586 [exp] 496 / 2e-177 AT5G24070 418 / 6e-147 Peroxidase superfamily protein (.1) Lus10022962 [exp] 448 / 3e-160 AT5G24070 293 / 1e-99 Peroxidase superfamily protein (.1) Lus10018375 [exp] 259 / 2e-84 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10032511 [exp] 244 / 1e-78 AT5G22410 302 / 8e-102 root hair specific 18 (.1) Lus10004859 [exp] 243 / 3e-78 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10043010 [exp] 243 / 6e-78 AT5G22410 300 / 9e-101 root hair specific 18 (.1) Lus10013631 [exp] 235 / 4e-75 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10001324 [exp] 233 / 4e-74 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10005679 [exp] 231 / 2e-73 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G132800 [exp] 486 / 7e-174 AT2G43480 446 / 2e-158 Peroxidase superfamily protein (.1) Potri.015G110200 [exp] 261 / 3e-85 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.013G066800 [exp] 231 / 3e-73 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 218 / 2e-68 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.016G125000 [exp] 213 / 8e-67 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 213 / 1e-66 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 212 / 2e-66 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.001G218450 [exp] 213 / 3e-66 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.001G218500 [exp] 213 / 3e-66 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.015G003600 [exp] 212 / 4e-66 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10004804 pacid=23178692 polypeptide=Lus10004804 locus=Lus10004804.g ID=Lus10004804.BGIv1.0 annot-version=v1.0 ATGATGAGTAGGAAGACAACAATGATTTCATGGGCGGCAGCCATGGCAGCAGCGGTGCTGATGATGATGTTGGTGGAGGAAGGAGTGGAGGCGGCGATCG GGCTGCAGCAGCCGTTGAAGCTAAAGTGGCATTACTACCGTAGGGAAACGAGTTGCAAGTACGCAGAGGAGTTTGTGAAGCACCAGGTTAAGCTGTTTTG GAACAGAGATCAAACAATCACCGCTAAGCTCCTACGTTTGCTCTACTCTGACTGCTTCGTCACCGGGTGCGATGCATCAGTACTGCTGGATGGGGCTGAT TCAGAGAAAACAGCACCTCAGAACACAAGGCTAGATGGGTTTGAACTTATAGATAGGATCAAAAAAGTGATGGAGATAAGGTGCCCAGGCGTTGTCTCGT GTGCAGACATCCTCAACCTTGCAACTAGAGATGCAGTTCACTTGGCAGGAGGTCCATCATATCCAGTGTTGACTGGTAGAATGGACGGTTTTCTATCGGC CGCATCCACCGTCGATCTCCCATCACCTTCCATCTCTGCCAATGCTGCATTGGCTTATTTCCAATCCAGAGGATTGGATGTTCTAGACATGGCCACTCTT TTAGGTGCCCACTCCATTGGTACGACCGACTGTCGCTACATCGTCGATCGGCTTTACAACTTCAAAACCACAAAGAAGGCAGACCCCAGTATGAACATGC AATTGGCTGACCAACTCAGGAAGAGATGCCCTCCTCTATCAAACACTTACACCGCCAACTCCTCGAGGGTTTTTTTGAACCCAGATTCTGCACATTCCTA CCAGCTCAGCAACTCCTACTACAAGAGGGCCTTGTCTTACCAATCCGTTCTAGGTGTCGACCAGCAGCTACTCTACACTAATGACACCCTACAAATCACC CAAGAATTTTCCCGGGCTGACGGCTTTGAAAACTGGAGAAGATCTGTTGCCCTCTCCATGGCTAGGATGGGCAACATCAATGTCTTAACAGGGAATGCAG GGGAGATACGTAGGAATTGCAGATACACCAACACTAAACTAAGTCTTCGCATCTCAACATGA
AA sequence Show only first row Show all	>Lus10004804 pacid=23178692 polypeptide=Lus10004804 locus=Lus10004804.g ID=Lus10004804.BGIv1.0 annot-version=v1.0 MMSRKTTMISWAAAMAAAVLMMMLVEEGVEAAIGLQQPLKLKWHYYRRETSCKYAEEFVKHQVKLFWNRDQTITAKLLRLLYSDCFVTGCDASVLLDGAD SEKTAPQNTRLDGFELIDRIKKVMEIRCPGVVSCADILNLATRDAVHLAGGPSYPVLTGRMDGFLSAASTVDLPSPSISANAALAYFQSRGLDVLDMATL LGAHSIGTTDCRYIVDRLYNFKTTKKADPSMNMQLADQLRKRCPPLSNTYTANSSRVFLNPDSAHSYQLSNSYYKRALSYQSVLGVDQQLLYTNDTLQIT QEFSRADGFENWRRSVALSMARMGNINVLTGNAGEIRRNCRYTNTKLSLRIST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24070			Peroxidase superfamily protein...		Lus10004804 [exp]	0	1
AT1G50060			CAP (Cysteine-rich secretory p...		Lus10025697 [exp]	1.4	0.9385
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10026040 [exp]	3.5	0.9407
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002894 [exp]	9.4	0.9036
AT5G14920			Gibberellin-regulated family p...		Lus10032168 [exp]	9.5	0.9280
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10001732 [exp]	9.7	0.8879
AT3G45070			P-loop containing nucleoside t...		Lus10033716 [exp]	20.2	0.8677
AT3G24750			unknown protein		Lus10025939 [exp]	21.6	0.9170
AT3G08030			Protein of unknown function, D...		Lus10016393 [exp]	22.1	0.9176
AT3G45070			P-loop containing nucleoside t...		Lus10031624 [exp]	24.2	0.8706
AT2G02310		ATPP2-B6	phloem protein 2-B6 (.1)		Lus10003445 [exp]	24.7	0.8782

Compare expression of checked genes

Lus10004804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.