Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06110 542 / 0 SKIP16 SKP1/ASK-interacting protein 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027693 [exp] 53 / 2e-07 AT1G06110 49 / 2e-06 SKP1/ASK-interacting protein 16 (.1) Lus10039964 [exp] 52 / 7e-07 AT5G62960 247 / 7e-78 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G130900 [exp] 606 / 0 AT1G06110 557 / 0.0 SKP1/ASK-interacting protein 16 (.1) Potri.017G027000 [exp] 599 / 0 AT1G06110 545 / 0.0 SKP1/ASK-interacting protein 16 (.1) Potri.015G078100 [exp] 52 / 4e-07 AT1G06110 48 / 3e-06 SKP1/ASK-interacting protein 16 (.1) Potri.012G082300 [exp] 49 / 2e-06 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF04379 [flax] [poplar] DUF525 ApaG domain
Representative CDS sequence Show only first row Show all	>Lus10004805 pacid=23178693 polypeptide=Lus10004805 locus=Lus10004805.g ID=Lus10004805.BGIv1.0 annot-version=v1.0 ATGGGGTTGGAGTCGCTGGGAGACCTAATTCTTCATGTAATCTTCACCAAGCTGGGACCCAAAGAAACTGCAAAAATGGCTTGCCTTAGCAAGAGTTTGA ATGCCTGGGCATCAGAAGATGATCTCTGGTCTAAGTTCTGTCTTCAAGATCTCGATCTCTCTGCCCCTCTTGGTCCTCATGGGAACACAGCTCCTTCCTT CAAAGCAACTTACCAGTTGTGGTATGGAGCTTTTGGCATGTATCCTTGGGAAGTTGTGCACCGAGTTAAAAGATGTTGGGATAGGCTAAAAACTTGGCTA ATGACCAATTTTCCTGAAGCTGCTTCTACTCTGCGAAATGGTGCTTCAGAAACTCATATTAATGAGCTGGAGAAGATTTTAAAAGTGAAATTGCCTGTCC CTACTAGGATACTCTACCGCTTTTGTGATGGTCAAGACTTACAAGGCAAAGGCTTCCCGAGAACTCAACACGGCAGTCCATTGGGTCTGATTGGTGGTTA CCTGTTTTATGGCCACTTTGTCAATGTTTACTTATTACCATTGCATGAAGTAATCATGAAAACTCAGCACATCACATGTAATATGGGATTTTCAAAGCAG TCCAAGTTTGTTGTTGTTGCTTCATCATCCACTTCCACTGAGAAACTGTTTTTCCTGAACTGCACCAACGGTCAACTCTATGTTGGAACTAGGAATCTTG TAACTGAAGGAGAAATGATCCCATGTGTCCCTCAAGGACTGATACGTTCAGTACATGATTTCAGTGGCCACAGTCAACAGGATGCATTGCTACTATGGCT GGAAGAGCATGGCCAACGCTTAAGTGATGGTGTCATTAAACTTCGAGAACAAGGAAATGTCAGAAGCATTTTCCAATTTCCTGAGGGACCTCCTTTCTGC ACCACTGCTGTTACTAATGGTGTTAAGGTCTGTGCTTCGGCTGTTTTTGTTCCTGAGCTAGCCGACCTTGAAGATGATGCTGGAAAGTACTGGTTTTCAT ATTCGATACGTTTGTCCCTTGTTCCTGAAGGATGTTTTGTTAGTGGTGTACACTTCAGCAGTTGCCAGCTGAATTGGAGGCACTGGATTATCCGTGCAAA TGATCGGATTGTATCTGATGTCAATGGGGAAGGTGTGATTGGGAAATTTCCATTGTTGCGGACAGATGAGAAAGAATTCGTTTATGAAAGTTGCACTCCT CTTCCTACTAGTTCGGGCTCTGTTGAAGGTTATTTCACATTCATACCTGGAAGATTAGCAGAGGCAAAAGGAGGTCCGTTTGATGTGCAAGTCGCACAGT TTCCGCTTGGCGTTCCAGACTATGTTTTCTGA
AA sequence Show only first row Show all	>Lus10004805 pacid=23178693 polypeptide=Lus10004805 locus=Lus10004805.g ID=Lus10004805.BGIv1.0 annot-version=v1.0 MGLESLGDLILHVIFTKLGPKETAKMACLSKSLNAWASEDDLWSKFCLQDLDLSAPLGPHGNTAPSFKATYQLWYGAFGMYPWEVVHRVKRCWDRLKTWL MTNFPEAASTLRNGASETHINELEKILKVKLPVPTRILYRFCDGQDLQGKGFPRTQHGSPLGLIGGYLFYGHFVNVYLLPLHEVIMKTQHITCNMGFSKQ SKFVVVASSSTSTEKLFFLNCTNGQLYVGTRNLVTEGEMIPCVPQGLIRSVHDFSGHSQQDALLLWLEEHGQRLSDGVIKLREQGNVRSIFQFPEGPPFC TTAVTNGVKVCASAVFVPELADLEDDAGKYWFSYSIRLSLVPEGCFVSGVHFSSCQLNWRHWIIRANDRIVSDVNGEGVIGKFPLLRTDEKEFVYESCTP LPTSSGSVEGYFTFIPGRLAEAKGGPFDVQVAQFPLGVPDYVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10004805 [exp]	0	1
AT4G24820			26S proteasome, regulatory sub...		Lus10017932 [exp]	2.0	0.8978
AT4G11790			Pleckstrin homology (PH) domai...		Lus10006338 [exp]	2.6	0.8908
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10038623 [exp]	3.2	0.8808
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	4.9	0.9014
AT4G10050			esterase/lipase/thioesterase f...		Lus10041054 [exp]	5.2	0.9005
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	5.7	0.9032
AT1G09660			RNA-binding KH domain-containi...		Lus10035768 [exp]	6.2	0.8596
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10013816 [exp]	8.5	0.8861
AT1G51710		ATUBP6, UBP6	ubiquitin-specific protease 6 ...		Lus10037610 [exp]	8.9	0.8331
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	12.5	0.8958

Compare expression of checked genes

Lus10004805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.