Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01380 198 / 3e-61 Trihelix Homeodomain-like superfamily protein (.1) AT2G38250 171 / 2e-51 Trihelix Homeodomain-like superfamily protein (.1) AT3G25990 75 / 8e-15 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 73 / 2e-14 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT5G63420 56 / 2e-08 Trihelix EMB2746 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) AT3G10000 53 / 1e-07 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT1G33240 52 / 4e-07 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT1G76890 52 / 4e-07 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT5G03680 51 / 7e-07 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT1G76880 48 / 6e-06 Trihelix Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002481 [exp] 107 / 2e-29 AT2G38250 91 / 4e-24 Homeodomain-like superfamily protein (.1) Lus10015824 [exp] 63 / 7e-11 AT1G13450 533 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Lus10036978 [exp] 62 / 2e-10 AT1G13450 523 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Lus10020873 [exp] 57 / 8e-09 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10033504 [exp] 56 / 1e-08 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10027718 [exp] 53 / 1e-07 AT5G03680 297 / 3e-95 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10016758 [exp] 52 / 3e-07 AT5G63420 1222 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10018887 [exp] 52 / 5e-07 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10023872 [exp] 51 / 8e-07 AT5G03680 278 / 3e-88 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117300 [exp] 187 / 1e-57 AT5G01380 179 / 2e-54 Homeodomain-like superfamily protein (.1) Potri.006G101400 [exp] 185 / 8e-57 AT5G01380 179 / 8e-55 Homeodomain-like superfamily protein (.1) Potri.001G129900 [exp] 153 / 2e-44 AT2G38250 115 / 4e-30 Homeodomain-like superfamily protein (.1) Potri.003G104500 [exp] 148 / 3e-42 AT2G38250 118 / 3e-31 Homeodomain-like superfamily protein (.1) Potri.008G179700 [exp] 73 / 3e-14 AT1G13450 541 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.010G055000 [exp] 71 / 2e-13 AT1G13450 518 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.001G454500 [exp] 56 / 2e-08 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.011G147400 [exp] 55 / 4e-08 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.012G095800 [exp] 54 / 8e-08 AT5G63420 1300 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Potri.019G010200 [exp] 52 / 3e-07 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004806 pacid=23158612 polypeptide=Lus10004806 locus=Lus10004806.g ID=Lus10004806.BGIv1.0 annot-version=v1.0 ATGGAAGGCCATGGCCGCCATCATCATCAGCAGCATCCCCATCATCTTCAGCAGCAGCTTCTCCATCCATACCAACAGCAACAACATCATCCTCAGCCTC ATCAGCAGATCGTCGGGGAGACGGGGGATAGTAGGTTCCCGCAATGGAGCATACAGGAGACGAAGGAGTTTCTGATGATAAGAGCAGAGCTGGATCGGAC TTTCATGGAGACGAAAAGGAACAAGCTTCTCTGGGAAGTCATCTCTTCCAAGATGAAGGAGAAAGGCTTCCTCCGTAGCCCCGAACAGTGCAAGTGCAAA TGGAAAAACCTCGTTACCCGTTACAAGGGATGCGAGACGATGGAGCCGGAATCAATGAGGCAGCAGTTCCCATTCTACAGCGAGCTACAAGCCATATTCG CCGGCCGAATGCAACGCATGCTATGGGCCGAAGCACAAGCCGGGTCGGGTAGTGGAGCACCCACCAGCAGCAGCGGGTCGAGAAAAAGAGGACAACACCA CCTCATGTCATCCGACGAAGAAGACGAGCTGGACGACGACATCGAGTTAGAACCAGCAGCAAGCGAAGGAGACAAGCCGCCAGCAGCCGCCGTCCAAACC ACCGCCGCCACGACCAGGAACAACAAGAAGACAAAGAAAGGGAAGGGTAATGTCGTGGGGGATAATAGTAGTAGTAATGCGGCGGTGGCGGCAATGAAGG AGGTGTTGGAGGAGTTCACGAGGCAGCAGATGGCGGCGGAGATGACGTGGAGGGAGGCGTACGAGGTCAGGGAGAATGAGAGGAGGATGCAGGAGATGGA GTGGCGGCGGAAGATGGAGGCGCTGGAGAACGAGAGGGTTATGATGGAGAGGAGGTGGAGGGAGAGGGAAGAGCAGAGGAGGGTTCGAGAGGAAGCGAGG GCTGAGAAGAGGGATGCTCTCATCACTGCTTTGCTCAACAAGCTCGCCAGAGACGAGGGCGGCGGCGACGGCGGGACTTAG
AA sequence Show only first row Show all	>Lus10004806 pacid=23158612 polypeptide=Lus10004806 locus=Lus10004806.g ID=Lus10004806.BGIv1.0 annot-version=v1.0 MEGHGRHHHQQHPHHLQQQLLHPYQQQQHHPQPHQQIVGETGDSRFPQWSIQETKEFLMIRAELDRTFMETKRNKLLWEVISSKMKEKGFLRSPEQCKCK WKNLVTRYKGCETMEPESMRQQFPFYSELQAIFAGRMQRMLWAEAQAGSGSGAPTSSSGSRKRGQHHLMSSDEEDELDDDIELEPAASEGDKPPAAAVQT TAATTRNNKKTKKGKGNVVGDNSSSNAAVAAMKEVLEEFTRQQMAAEMTWREAYEVRENERRMQEMEWRRKMEALENERVMMERRWREREEQRRVREEAR AEKRDALITALLNKLARDEGGGDGGT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01380	Trihelix		Homeodomain-like superfamily p...		Lus10004806 [exp]	0	1
					Lus10016654 [exp]	2.4	0.8472
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10007349 [exp]	3.2	0.8681
AT5G39670			Calcium-binding EF-hand family...		Lus10012199 [exp]	10.1	0.8139
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020772 [exp]	12.2	0.8284
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10005326 [exp]	15.5	0.7977
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10003336 [exp]	17.3	0.7779
AT2G27310			F-box family protein (.1)		Lus10013309 [exp]	19.4	0.8147
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10010938 [exp]	20.3	0.8134
AT5G39670			Calcium-binding EF-hand family...		Lus10007536 [exp]	21.9	0.8116
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10013039 [exp]	26.6	0.8284

Compare expression of checked genes

Lus10004806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.