Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51850 987 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT1G74740 751 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT5G19450 743 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT5G12480 741 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT1G18890 724 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT3G57530 714 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT2G41860 697 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT2G31500 626 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 583 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 573 / 0 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002482 [exp] 1070 / 0 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027808 [exp] 1009 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10005038 [exp] 832 / 0 AT3G51850 793 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10009947 [exp] 736 / 0 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10027361 [exp] 736 / 0 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10014907 [exp] 728 / 0 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10042370 [exp] 726 / 0 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10008631 [exp] 714 / 0 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10026742 [exp] 698 / 0 AT3G57530 793 / 0.0 calcium-dependent protein kinase 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117200 [exp] 1003 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.006G101300 [exp] 996 / 0 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.012G071700 [exp] 759 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.015G066200 [exp] 754 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.016G054600 [exp] 751 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.001G257100 [exp] 744 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.006G052900 [exp] 738 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.009G052700 [exp] 737 / 0 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.007G127000 [exp] 637 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.010G244800 [exp] 567 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10004807 pacid=23158627 polypeptide=Lus10004807 locus=Lus10004807.g ID=Lus10004807.BGIv1.0 annot-version=v1.0 ATGGGTAATTGCTGCAGATCTCCGGCGGCAGTAGCCAGGGAGGACGTGAAATCAAGCTTCTCCGGCCACGATCACTCCAAGAAGGACGGCCCCTCCGGAA AGAGCAAGCTGCCGATCACAGTCCTCAATGTTTCCAAGGAGAATATCGAGGAGAGGTACCTCGTCGACAGGGAGCTCGGCCGTGGGGAGTTCGGGGTGAC GTATCTGTGCATCGACAGGGAGACGAGGGAGCTGCTGGCGTGCAAGAGCATCTCCAAGAGGAAGCTGAGGACGGCGGTGGATATCGAGGACGTGAGGAGG GAAGTGGCGATTATGAAGCACTTGCCGAGGAATTCCAGCATCGTTAGCTTGAAAGAGGCCTGTGAGGACGACAATGCTGTGCATTTGGTTATGGAGCTCT GTGAAGGCGGGGAGCTTTTTGATCGGATTGTGGCTAGGGGACACTATACTGAGCGAGCTGCAGCTGCTGTGACGAGGACCATTGTGGAGGTTGTTCAGCT CTGTCATAAGCATGGTGTGATTCATAGGGATTTGAAGCCGGAGAACTTCTTGTTTGCTAATAAGAAGGAGAATTCGCCTCTCAAGGCCATTGATTTTGGT TTGTCCATTTTCTTCAAGCCAGGGGAGAGGTTTTCTGAAATAGTTGGAAGTCCATACTACATGGCTCCAGAGGTGCTCAAGAGGAACTATGGCCCTGAAA TTGACATATGGAGTGCAGGGGTCATTCTCTACATCTTGTTGTGCGGGGTTCCTCCTTTTTGGGCTGAGTCTGAACAAGGAGTTGCACAAGCAATACTCCG CGGGATCATAGATTTCAAACGGGATCCATGGCCAAATATTTCAGACACTGCCAAGAGTTTGGTGAAGGCAATGTTAGAGCCAGACCCAAAACTTCGGCTC ACTGCAAAACAAGTCATTGAGCATCCATGGCTGCAAAATGCTAAAAAGGCTCCAAATGTTCCCCTGGGTGACGTTGTCAAATCAAGGCTTAAACAGTTTT CAATGATGAACAGGTTCAAAAGAAAAGCCTTACGGGTCATTGCGGAGTTCTTATCTGTTGAAGAGGTGGAGGACATCAAAGAAACGTTCAAGAAGATGGA CACTGACAATGACGGTATCATCTCAATCGAAGAACTAAAAGCCGGACTTCGCAGTTTCCAATCCCAGCTTGCGGAATCAGAAGTTCAACTGTTGATTGAG GCTGTGGATACAAATGGCAAAGGCACTCTAGACTATGGAGAGTTTCTTGCAGTTTCACTACACCTACAAAGAAGTGCCAACGATGAGCATCTCAGGAAAG CCTTCTCGTATTTTGACAAAGATGGGAATGGCTTTATCGAGCCAGAGGAGCTTCGGGATGCACTAATGGAAGACGGAGCAGATGACTGTACAGACGTAGC AAATGACATCTTCCAAGAAGTGGACACAGACAAGGATGGGAAAATCAGCTACGAGGAATTTGCGGCGATGATGAAAACCGGAACAGACTGGAGGAAAGCT TCTCGGCATTATTCCAGAGGGAGATTCAACAGCCTCAGCATCAAGCTGATGAAGGACGGTTCACTGAACTTGGGAAATGAGTGA
AA sequence Show only first row Show all	>Lus10004807 pacid=23158627 polypeptide=Lus10004807 locus=Lus10004807.g ID=Lus10004807.BGIv1.0 annot-version=v1.0 MGNCCRSPAAVAREDVKSSFSGHDHSKKDGPSGKSKLPITVLNVSKENIEERYLVDRELGRGEFGVTYLCIDRETRELLACKSISKRKLRTAVDIEDVRR EVAIMKHLPRNSSIVSLKEACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFG LSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGIIDFKRDPWPNISDTAKSLVKAMLEPDPKLRL TAKQVIEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIAEFLSVEEVEDIKETFKKMDTDNDGIISIEELKAGLRSFQSQLAESEVQLLIE AVDTNGKGTLDYGEFLAVSLHLQRSANDEHLRKAFSYFDKDGNGFIEPEELRDALMEDGADDCTDVANDIFQEVDTDKDGKISYEEFAAMMKTGTDWRKA SRHYSRGRFNSLSIKLMKDGSLNLGNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10004807 [exp]	0	1
AT4G15930			Dynein light chain type 1 fami...		Lus10006500 [exp]	1.4	0.8742
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10039206 [exp]	2.8	0.8230
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	4.7	0.8502
AT5G67070		RALFL34	ralf-like 34 (.1)		Lus10003931 [exp]	5.1	0.8066
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10013037 [exp]	5.7	0.8433
AT1G32860			Glycosyl hydrolase superfamily...		Lus10017344 [exp]	6.9	0.8366
AT5G44670			Domain of unknown function (DU...		Lus10024731 [exp]	7.1	0.8002
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	7.7	0.8348
AT4G15930			Dynein light chain type 1 fami...		Lus10037494 [exp]	7.9	0.8266
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10011028 [exp]	8.8	0.8086

Compare expression of checked genes

Lus10004807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.