Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05600 457 / 8e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G55970 427 / 4e-150 ATJRG21 jasmonate-regulated gene 21 (.1) AT2G38240 404 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G22880 236 / 2e-75 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) AT4G25300 234 / 2e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17020 232 / 1e-73 ATSRG1, SRG1 senescence-related gene 1 (.1) AT3G21420 231 / 2e-73 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 229 / 1e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 227 / 7e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005037 [exp] 565 / 0 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004387 [exp] 434 / 7e-153 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10027807 [exp] 378 / 1e-131 AT5G05600 330 / 1e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022292 [exp] 244 / 3e-78 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10011979 [exp] 235 / 7e-75 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10011980 [exp] 234 / 2e-74 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10006518 [exp] 233 / 6e-74 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011981 [exp] 229 / 1e-72 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10032930 [exp] 226 / 1e-71 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117100 [exp] 528 / 0 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 500 / 6e-179 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 481 / 2e-171 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 476 / 1e-169 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 471 / 2e-167 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G355100 [exp] 249 / 2e-80 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.010G023600 [exp] 243 / 4e-78 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G381700 [exp] 239 / 2e-76 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.011G024100 [exp] 239 / 2e-76 AT4G16330 419 / 7e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G382400 [exp] 238 / 6e-76 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10004808 pacid=23158597 polypeptide=Lus10004808 locus=Lus10004808.g ID=Lus10004808.BGIv1.0 annot-version=v1.0 ATGAACTGCCTCCAGAGTTGGCCGGAGCCCATAGTCCGGGTCCAGTCCTTATCCGAGAGCGGGATCCGAAAAATACCCGACCGTTACGTCAAGCCGCCGT CCCACCGACCTCTCAACCACATGCAAACGACCTCACCGGCGGCGGAAGCAAACATCCCGGTGATCGACCTGTCGGAGGCGTTCAGTGAGGACACCGCCGT GAGGGAGGCGGCGATGAGGAAGCTGGCGGCGGCGTGCGAGGAGTGGGGGTTCTTCCAGGTGGTCAACCACGGGGTTGACCCGGTGCTGATGCGGAAGATC AGGGAGATTTGGCGGGAGTTCTTTAGCCTGCCAATTGACGTTAAGCAGAAGTACGCAAACGACCCCGTTTCGTACGAAGGGTACGGCAGCCGTCTGGGAG TTGAGAAAGGTGCCACGCTGGACTGGAGCGACTACTTCTTCCTCCATTATTTGCCGGCTAGGCTCCGGTGCCCCGGCAAGTGGCCCGAGTACCCGGATTC ATGCAGGGAATTGGTGGGTGAATACGGTAAAGAAGTAGTGAAACTTGGCGGCAAGCTAATGAAGATATTCTCCACCAACCTCGGACTGGAACAAGACGGT CTCCAAGACGCATTCGGCGGCGAAGATTTCGGAGGCTGTCTGAGGGTCAACTTCTACCCGAAATGCCCTCAGCCGGACCTCACCTTAGGGTTATCCCCCC ACTCCGATCCTGGCGGGATGACCATCCTCTTACCGGACGAGAACGTCTCCGGACTTCAAGTGCGGAAAGACAGCAACTGGGTCACCGTCAAACCTGCCGG AGACGCCTTCATCATCAACGTCGGGGACCAGATTCAGGTGCTTAGCAACGCGGTCTACAAGAGTGTGGAGCATAGGGTGATAGTGAACTCGGCCAAGGAT CGAGTGTCGCTTGCCTTCTTCTATAATCCGCGAGGGGATCTTCCGATCGGACCGTTGCCGGAGCTGGTGAAACCTGGTCGGCCGGCGTTGTACCCGCCGA TGACGTTTTACGAGGATAGGCTGGGTGTTTGGGGTGTTTATTAG
AA sequence Show only first row Show all	>Lus10004808 pacid=23158597 polypeptide=Lus10004808 locus=Lus10004808.g ID=Lus10004808.BGIv1.0 annot-version=v1.0 MNCLQSWPEPIVRVQSLSESGIRKIPDRYVKPPSHRPLNHMQTTSPAAEANIPVIDLSEAFSEDTAVREAAMRKLAAACEEWGFFQVVNHGVDPVLMRKI REIWREFFSLPIDVKQKYANDPVSYEGYGSRLGVEKGATLDWSDYFFLHYLPARLRCPGKWPEYPDSCRELVGEYGKEVVKLGGKLMKIFSTNLGLEQDG LQDAFGGEDFGGCLRVNFYPKCPQPDLTLGLSPHSDPGGMTILLPDENVSGLQVRKDSNWVTVKPAGDAFIINVGDQIQVLSNAVYKSVEHRVIVNSAKD RVSLAFFYNPRGDLPIGPLPELVKPGRPALYPPMTFYEDRLGVWGVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10004808 [exp]	0	1
AT4G08250	GRAS		GRAS family transcription fact...		Lus10008316 [exp]	1.0	0.9874
AT1G71520	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041044 [exp]	5.7	0.9797
AT1G47670			Transmembrane amino acid trans...		Lus10022641 [exp]	6.0	0.9850
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10006984 [exp]	7.5	0.9868
AT1G14550			Peroxidase superfamily protein...		Lus10009902 [exp]	9.8	0.9854
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Lus10004223 [exp]	11.4	0.9784
					Lus10024872 [exp]	12.0	0.9825
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028377 [exp]	14.8	0.9840
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10034300 [exp]	19.0	0.9627
					Lus10021010 [exp]	19.9	0.9638

Compare expression of checked genes

Lus10004808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.