Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55960 258 / 2e-84 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 89 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 90 / 2e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29770 76 / 2e-15 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G46410 75 / 1e-14 SSP4 SCP1-like small phosphatase 4 (.1.2) AT4G18140 73 / 4e-14 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT1G55900 62 / 1e-10 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G11860 59 / 1e-09 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT1G43600 41 / 0.0005 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43610 41 / 0.0006 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002484 [exp] 531 / 0 AT3G55960 333 / 2e-114 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009890 [exp] 262 / 4e-86 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10014844 [exp] 258 / 1e-84 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028284 [exp] 245 / 2e-79 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007321 [exp] 83 / 1e-17 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 76 / 2e-15 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10040202 [exp] 64 / 1e-12 AT3G55960 77 / 3e-18 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10004596 [exp] 64 / 7e-11 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2) Lus10032582 [exp] 62 / 1e-10 AT1G55900 378 / 2e-130 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G100800 [exp] 283 / 3e-94 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G188500 [exp] 272 / 3e-90 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 259 / 2e-85 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G116700 [exp] 248 / 6e-81 AT3G55960 248 / 1e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 87 / 3e-19 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G062900 [exp] 86 / 4e-19 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G353700 [exp] 69 / 1e-12 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.011G078300 [exp] 64 / 5e-11 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.011G093000 [exp] 60 / 6e-10 AT1G55900 415 / 5e-145 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.003G173700 [exp] 60 / 1e-09 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10004810 pacid=23158605 polypeptide=Lus10004810 locus=Lus10004810.g ID=Lus10004810.BGIv1.0 annot-version=v1.0 ATGGCGGAGCCAGTCGGAGGAGGATCGGCGAGGGAGCAACGACGACAAGTCTGGCGGGTCTCATCGCCGGTATTACTGGATGCTTGGAGATGGCTAATCA GTTGGTTGACTTTTCTCCTCCAGATCGTCAGAGGAACCCCTTCTGCAGCCTTTATGTTACTTTCTTATGTTGGCTTTGGGCAATCCTTAGTGCTTCCTGC ATCTGCTTCTTCTCCTCCTAATCACTCTTTCAAGCGATTGCCCGTCAACGAAGTTTCTTTACAAGGGACGGAAAAGTCGTCGTCCGAAGTTGGCAATCCC CACATAGAGAAGCTCACAGTGGTCCTTGACTTGGATGAAACTCTGGTCTGTGCATACGAAACATCGAGCTTGCTGCCAAATGTTCGAACTCGAGCTATAG AAGCTGGAGTGAAATGGCTCGAGATTGAATGCGTCTCCGAAAAGAAGGAAATTGATGGTAGGAAGAAGATAAACCACGTTATAGTATTCGAAAGGCCCGG TTTGCAAGAGTTCTTGACACAGCTTGGTGAATTCGCCCACCTGGTCTTGTTTACTGCTGGACTAGAAGGGTATGCTAGACCGCTGGTCGACAAGATATAT TTGGAGGGTCGATTCTGTATGAGACTCTATAGGCCTTCTACTGTCAGCACAGAACACGTGAAGGATCTCTTGTTAGTCTCGAAAGATATGCGACGTATTG TAATCGTTGATAACAACCCGTACAGTTTCCTGCTTCAGCCATTGACTGCTATACCGTGCACGCCATTCTCAGCTAGTCAAACTTACGATCATCAGTGTAG CGTTGATTTGGACTTTGTGCATCTTGTGGATGTGCTGCTTCCGTTCATGAAGAAACTGTCATATGAGAAGGATGTTAGGCCTGTACTCTACGAGAGGTTC CACATGCCGGAATGGTTCCAAACACATGGGATTCCATCATCTGTAGAGACAAAACTCTATACAGCAACAATTTACAATATACCTATGATGCTGCCACAAT TTAATCTGGAGATAGCAAGGCTCCTGAAGTAG
AA sequence Show only first row Show all	>Lus10004810 pacid=23158605 polypeptide=Lus10004810 locus=Lus10004810.g ID=Lus10004810.BGIv1.0 annot-version=v1.0 MAEPVGGGSAREQRRQVWRVSSPVLLDAWRWLISWLTFLLQIVRGTPSAAFMLLSYVGFGQSLVLPASASSPPNHSFKRLPVNEVSLQGTEKSSSEVGNP HIEKLTVVLDLDETLVCAYETSSLLPNVRTRAIEAGVKWLEIECVSEKKEIDGRKKINHVIVFERPGLQEFLTQLGEFAHLVLFTAGLEGYARPLVDKIY LEGRFCMRLYRPSTVSTEHVKDLLLVSKDMRRIVIVDNNPYSFLLQPLTAIPCTPFSASQTYDHQCSVDLDFVHLVDVLLPFMKKLSYEKDVRPVLYERF HMPEWFQTHGIPSSVETKLYTATIYNIPMMLPQFNLEIARLLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10004810 [exp]	0	1
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	1.0	0.9786
AT2G32070			Polynucleotidyl transferase, r...		Lus10017123 [exp]	1.4	0.9603
AT5G49710			unknown protein		Lus10015965 [exp]	3.5	0.9588
AT2G44420			protein N-terminal asparagine ...		Lus10033495 [exp]	3.5	0.9566
AT2G34930			disease resistance family prot...		Lus10024736 [exp]	5.0	0.9400
AT1G55160			unknown protein		Lus10011503 [exp]	5.8	0.9360
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	8.4	0.9485
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	9.2	0.9444
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	9.5	0.9559
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009664 [exp]	9.5	0.9435

Compare expression of checked genes

Lus10004810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.