Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01410 537 / 0 PDX1, ATPDX1.3, RSR4 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) AT2G38230 508 / 0 ATPDX1.1 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.1, pyridoxine biosynthesis 1.1 (.1) AT3G16050 360 / 4e-125 A37, ATPDX1.2 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1) AT2G38210 134 / 1e-39 PDX1L4 putative PDX1-like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038318 [exp] 528 / 0 AT5G01410 578 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10036181 [exp] 516 / 0 AT5G01410 566 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10002486 [exp] 363 / 7e-128 AT5G01410 395 / 1e-140 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10011450 [exp] 291 / 4e-99 AT3G16050 372 / 9e-131 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1) Lus10037545 [exp] 284 / 3e-96 AT3G16050 370 / 5e-130 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G116400 [exp] 537 / 0 AT5G01410 532 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Potri.006G100500 [exp] 536 / 0 AT5G01410 538 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Potri.001G182100 [exp] 379 / 2e-132 AT3G16050 483 / 9e-174 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01680 [flax] [poplar] SOR_SNZ SOR/SNZ family
Representative CDS sequence Show only first row Show all	>Lus10004812 pacid=23158603 polypeptide=Lus10004812 locus=Lus10004812.g ID=Lus10004812.BGIv1.0 annot-version=v1.0 ATGGAAGGCACAGGTGTCGTCGCGGTGTATGGAAACGGAGCTCTCACCGAGACGAAGAAGGCGACCTTCTCCGTCAAGGTGGGCCTGGCGCAGATGCTCC GTGGAGGTGTTATTATGGATGTCGTTAACGCCGAACAGGCTCGGATCGCTGAAGAAGCCGGTGCATGCGCCGTCATGGCGCTGGAGCGAGTCCCTGCCGA TATCAGATCCCAAGGCGGCGTCGCTAGGATGAGCGACCCTCAGCTAATCAAGGAGATTAAACAGGCTGTGACAATCCCCGTCATGGCCAAGGCTCGTATC GGCCACTTCGTCGAGGCTCAGATCCTCGAGGCGATTGGGATCGACTACATCGACGAGAGCGAGGTCCTAACCCTAGCTGACGAGGAGAACCACATCAACA AGCACAATTTCCGCATCCCGTTCGTCTGCGGGTGCCGTAACCTAGGGGAGGCCCTGCGGAGGATTAGGGAAGGCGCCGCCATGATCAGGACCAAGGGTGA GGCCGGCACGGGGAACATAATCGAGGCGGTGCGTCACGTGAGGTCGGTGATGGGGGACATCAGGGTTCTGAGGGGTATGGACGACGATGAGGTCTTCACC TTCGCCAAGAAGCTCGCGGCTCCTTACGATTTGGTAATGCAGACCAAGCAGCTGGGAAGGCTCCCCGTTGTTCAGTTCGCCGCCGGTGGTGTGGCCACCC CTGCTGACGCTGCTCTGATGATGCAGCTAGGTTGTGACGGAGTGTTCGTCGGTTCCGGTGTGTTCAAGAGTGGTGACCCGGCCAAGAGAGCAAGGGCGAT TGTTCAGGCGGTGACTAACTACACCGACCCAAATGTTCTTGCTGAGGTCAGCTGTGGGCTTGGTGAAGCCATGGTTGGGATTAATCTCAATGATAAGAAG GTTGAAAGGTTTGCCAGCAGGTCCGAATAA
AA sequence Show only first row Show all	>Lus10004812 pacid=23158603 polypeptide=Lus10004812 locus=Lus10004812.g ID=Lus10004812.BGIv1.0 annot-version=v1.0 MEGTGVVAVYGNGALTETKKATFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQAVTIPVMAKARI GHFVEAQILEAIGIDYIDESEVLTLADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRGMDDDEVFT FAKKLAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTNYTDPNVLAEVSCGLGEAMVGINLNDKK VERFASRSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10004812 [exp]	0	1
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	1.4	0.8874
AT2G04790			unknown protein		Lus10012354 [exp]	1.7	0.8923
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10002486 [exp]	2.4	0.8175
AT2G37880			Protein of unknown function, D...		Lus10022595 [exp]	2.8	0.8112
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Lus10021965 [exp]	5.3	0.7960
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	5.5	0.8177
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10032938 [exp]	6.6	0.7995
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10036637 [exp]	7.7	0.7857
AT5G13030			unknown protein		Lus10031224 [exp]	8.9	0.7911
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022216 [exp]	15.4	0.7700

Compare expression of checked genes

Lus10004812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.