Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38185 309 / 1e-100 RING/U-box superfamily protein (.1.2.3.4) AT5G01450 300 / 6e-97 RING/U-box superfamily protein (.1) AT2G38220 247 / 4e-77 RING/U-box superfamily protein (.1) AT2G38195 244 / 6e-76 RING/U-box superfamily protein (.1.2) AT4G24204 76 / 6e-16 RING/U-box superfamily protein (.1.2.3) AT3G23280 59 / 4e-09 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G14365 57 / 8e-09 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT1G59560 52 / 5e-07 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT3G53410 48 / 7e-06 RING/U-box superfamily protein (.1) AT1G54150 48 / 1e-05 E3 Ubiquitin ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002487 [exp] 782 / 0 AT5G01450 347 / 5e-115 RING/U-box superfamily protein (.1) Lus10010392 [exp] 61 / 1e-10 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3) Lus10003551 [exp] 57 / 5e-09 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009035 [exp] 55 / 1e-07 AT3G23280 524 / 0.0 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009674 [exp] 52 / 6e-07 AT3G23280 499 / 6e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10008163 [exp] 50 / 2e-06 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10041300 [exp] 48 / 1e-05 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10037412 [exp] 48 / 1e-05 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10038656 [exp] 48 / 2e-05 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G116300 [exp] 446 / 1e-153 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) Potri.006G100400 [exp] 439 / 4e-151 AT2G38185 341 / 2e-113 RING/U-box superfamily protein (.1.2.3.4) Potri.001G251900 [exp] 350 / 5e-116 AT5G01450 327 / 7e-108 RING/U-box superfamily protein (.1) Potri.014G020900 [exp] 147 / 2e-39 AT5G01450 116 / 9e-29 RING/U-box superfamily protein (.1) Potri.007G050500 [exp] 67 / 9e-13 AT4G24204 81 / 4e-20 RING/U-box superfamily protein (.1.2.3) Potri.005G225300 [exp] 57 / 2e-08 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070750 [exp] 56 / 4e-08 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.018G011300 [exp] 54 / 7e-08 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.003G156400 [exp] 54 / 2e-07 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.010G070800 [exp] 52 / 8e-07 AT3G23280 502 / 2e-176 XB3 ortholog 5 in Arabidopsis thaliana (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004813 pacid=23158600 polypeptide=Lus10004813 locus=Lus10004813.g ID=Lus10004813.BGIv1.0 annot-version=v1.0 ATGGCACCACCGGGAACGTTTATTCCAAAATTGCAAGTTGCGGCAACAGCAATTCTCAGCTGGAGCTGGACTGATTGTTCACAGTTGCAGGTCACTCTTC CATTCTCTTATTCCGTCGCTGCTCTTCTTATAATGGACGAAGACTCACATCATTCCGCAATCGACGTCGACGACGGAGGTTCCCCGTCTAACTCCGATTC TGGAAGGGACGGTGAGTCATCTTCTTCTTCGCAAGTCCGGGAGGAAGACGAGGATCCTGAGCACGGCAGCGAGCACCACTACCATCGTTTTCCGGAGCCG GAGATCGAGCAGCAGCGTCAGTATCATCAACAACAAGAGGTTGGCGTCTCCGATCTAGGAAGGAACTCGCCTGATGCTAGTGGTCTTCCGTCGCTTGGAG ATGACACTTGGTCTTGTGTCACTGTCATCCTCACCTTTTGGTTATTCGTTTCGATGACTTTGATATTTGGAGTATATGGTCCGGAGAGTCTCAAGTTGGG GCCGAATTGCTCCCTTCTTATCCGACCGAATCCCTTATTCGTGCAGACTGTAAATGTGGAGGAATTGGATGATTCCAACCCTGGTCTAATGCTCTATGGA TTTTATAAACCTCCTTCACTCGATAAGGTAGAGACATGGTTGGACAAGCGCAAGGGAAGTGTTCCCTATAATTCTCACGAGGCAAGTTTGTTCTGTGAAG AAGGCTTCGACCAGTGGCTGGACCAGCCTGCATATCCTAATTCTACTCTATCATGGCACATAATCCATGGAAGTGGTACTATCTACCAGAGGATAAGCAG ATCTTCTCTCTACTATGTCGCTCTTGGCAACGTGTACTCCGAGACAGTGCAGGTGCAGTTGAAAATCAAAATAAGAGCTTTGCTGTATGACACAAGTGGA GCTTATTACAAGTGCTCATTCCCAGATGGGAGGTGTCGTTTACCGGTGTCATTCCTGAACGATAATCCTGTAGTTTTAACAACGCCTGGTACAAAACAGG CATCGATTGGAGAAGAATGGTACGTTAAAGTGTCCTATGGACCACGATGGGCATTATATATACTCGGTATTGCTGCATTGTCGATCCTCATGCTGGTGGC CTTAAACCTCTTAAACAAGTTCCGATGCATGAATGGAGAAAGCAGCGGTACTAGGGGAACAAGAGCCCCTCTGCTTTCAAATAAAGAAGATGACCTCTCA AGTTGGGGGTCTTCTTACGAATCTGTGTCCAACGACGAGGAAAACAATCTTGAAGAACTTATGCGAGCAGGTCATCGAGAAGGGAAATCATCGAGGGATG GTGATGATAGCAGCTATACACGGCGACTTTGCGCCATCTGTTTTGATGCCCCGAGAGATTGCTTCTTCCTCCCGTGTGGTCACTGCGTCGCTTGTTTTGC TTGTGGAACTAGGATCGCTGAGGTCTCTGGTACATGCCCGATCTGCCGTGGGCACATGAAGAAGGTGAAGAAGATTTATACAGTCTAA
AA sequence Show only first row Show all	>Lus10004813 pacid=23158600 polypeptide=Lus10004813 locus=Lus10004813.g ID=Lus10004813.BGIv1.0 annot-version=v1.0 MAPPGTFIPKLQVAATAILSWSWTDCSQLQVTLPFSYSVAALLIMDEDSHHSAIDVDDGGSPSNSDSGRDGESSSSSQVREEDEDPEHGSEHHYHRFPEP EIEQQRQYHQQQEVGVSDLGRNSPDASGLPSLGDDTWSCVTVILTFWLFVSMTLIFGVYGPESLKLGPNCSLLIRPNPLFVQTVNVEELDDSNPGLMLYG FYKPPSLDKVETWLDKRKGSVPYNSHEASLFCEEGFDQWLDQPAYPNSTLSWHIIHGSGTIYQRISRSSLYYVALGNVYSETVQVQLKIKIRALLYDTSG AYYKCSFPDGRCRLPVSFLNDNPVVLTTPGTKQASIGEEWYVKVSYGPRWALYILGIAALSILMLVALNLLNKFRCMNGESSGTRGTRAPLLSNKEDDLS SWGSSYESVSNDEENNLEELMRAGHREGKSSRDGDDSSYTRRLCAICFDAPRDCFFLPCGHCVACFACGTRIAEVSGTCPICRGHMKKVKKIYTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38185			RING/U-box superfamily protein...		Lus10004813 [exp]	0	1
AT2G01680			Ankyrin repeat family protein ...		Lus10034579 [exp]	2.0	0.8765
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10012284 [exp]	3.6	0.8846
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10034399 [exp]	8.1	0.8164
AT2G31350		GLX2-5	glyoxalase 2-5 (.1.2)		Lus10018625 [exp]	8.8	0.8263
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10006771 [exp]	9.5	0.8269
AT5G57710			Double Clp-N motif-containing ...		Lus10019984 [exp]	10.0	0.8187
AT3G19900			unknown protein		Lus10034203 [exp]	11.1	0.8603
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10019944 [exp]	13.1	0.8366
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10021967 [exp]	14.3	0.8100
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	17.5	0.8192

Compare expression of checked genes

Lus10004813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.