Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01460 765 / 0 LMBR1-like membrane protein (.1) AT3G08930 758 / 0 LMBR1-like membrane protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027794 [exp] 813 / 0 AT5G01460 921 / 0.0 LMBR1-like membrane protein (.1) Lus10035505 [exp] 809 / 0 AT5G01460 917 / 0.0 LMBR1-like membrane protein (.1) Lus10002488 [exp] 248 / 1e-78 AT5G01460 286 / 2e-93 LMBR1-like membrane protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G116200 [exp] 759 / 0 AT5G01460 848 / 0.0 LMBR1-like membrane protein (.1) Potri.006G100200 [exp] 759 / 0 AT5G01460 825 / 0.0 LMBR1-like membrane protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04791 [flax] [poplar] LMBR1 LMBR1-like membrane protein
Representative CDS sequence Show only first row Show all	>Lus10004814 pacid=23158609 polypeptide=Lus10004814 locus=Lus10004814.g ID=Lus10004814.BGIv1.0 annot-version=v1.0 ATGCTGCCGGCTGACGTGGCGAACCGGCAAGCCTGTCGCAACGCGATATACAATGGCGCCTGTAATCTGACTTTGCCGATGAAGGATCTTTGGATGGCTG TATATATCATTGACGCTGTACTAGTGTTCTTCATCATCCCCTTCGCTATGTTCTACTATGAAGGTGACCAGGACAAGACTGTTGGCAAGCGAGTTAAGAG CGCAGTTAAGTGGGTGATAGCTACAGCCATTGTTTGCGCTCTTCTGCTCGGCATCTTATATGGGCTAGTTGGAAAGGTGGATTTCACTGTTAGGCATCTC ACCTCAACGACAACGAACTTTCCAACTTCATGGGATCTCTCCATGAGTCAACCATGTATTGGAAATAATGCACGCCAGTGCTCAGCATATCTTGCCAGTG CCGCCTCAGAGAAGACATGGACCATGCAAACTACATTTCCTGAATATGTTGTCGCACTTGCTACGATAGCTGGGTCAGTGCTTTTCTCGATATTTGGTGG AGTTGGCATTGCATCTTTGCCTCTTGGACTTATTTTTTCATTTATCAGGCGGCCAAAGGCTGTTATCACTCGCTCACAGTACATTAAGGAAGCAACAGAA CTTGGTAAGAAAGCACGAGAACTGAAGAGGGCGGCTGATTCACTTCATCAGGAAGAGAGAAGTGGCGCTAAGGGGAGAAAATGGCGTAAAAATGTAAAAT CAGTGGAAAAGGAATTGCTTCAGTTGGAAGAAGATGTAAACCTGCTCGAAGAGATGTACCCTCAAGGAGAAAAGGCTGAGACTACTTGGGCTCTCACTGT TCTTGCTTATCTGGCAAAACTTGTGTTAGGAACCTTGGGGCTGATTGTTTCAGTGGCTTGGATCGTTCATATTATCATATATCTTCTGATCGATCCTCCA CTTTCTCCTCTCCTCAATGAGGTTTTCATCAAGTTGGACAGCGTATGGGGTCTTCTTGGTACTGTAGCATTTGCTTTCTTCTGCTTTTACCTTCTCCTTG CTGTGGTGGCTGGTGCAACGATGCTGGGTCTCAGAATAGTGTTCATTACAATTCATCCCATGAAGTGGGGAGCAACCCTCATGAACTCATTTCTTTTCAA CGTCGGACTCATTCTCCTGTGCTCCATTAGTGTAATCCAGTTTTGTACCACAGCATTTGGCTATTATGCACAAGCAACTGCAGCTCAAGAAATTTTTGGT CACACGTTACAGTCTCTCCGCGGGATAAAATATCTATACAAGTACAATGTGTTCCAAATTGCATTTATTGCTCTTGCGGGCTTGACTTTCGTTTATTATG CTGCATTTTGGACTGAGGACACACTGAGTGAAACCAACGCTGACGCTTTTCTCCTTCTGGTTTAA
AA sequence Show only first row Show all	>Lus10004814 pacid=23158609 polypeptide=Lus10004814 locus=Lus10004814.g ID=Lus10004814.BGIv1.0 annot-version=v1.0 MLPADVANRQACRNAIYNGACNLTLPMKDLWMAVYIIDAVLVFFIIPFAMFYYEGDQDKTVGKRVKSAVKWVIATAIVCALLLGILYGLVGKVDFTVRHL TSTTTNFPTSWDLSMSQPCIGNNARQCSAYLASAASEKTWTMQTTFPEYVVALATIAGSVLFSIFGGVGIASLPLGLIFSFIRRPKAVITRSQYIKEATE LGKKARELKRAADSLHQEERSGAKGRKWRKNVKSVEKELLQLEEDVNLLEEMYPQGEKAETTWALTVLAYLAKLVLGTLGLIVSVAWIVHIIIYLLIDPP LSPLLNEVFIKLDSVWGLLGTVAFAFFCFYLLLAVVAGATMLGLRIVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCTTAFGYYAQATAAQEIFG HTLQSLRGIKYLYKYNVFQIAFIALAGLTFVYYAAFWTEDTLSETNADAFLLLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01460			LMBR1-like membrane protein (....		Lus10004814 [exp]	0	1
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	13.3	0.8681
AT1G27460		NPGR1	no pollen germination related ...		Lus10018679 [exp]	14.7	0.8326
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	23.8	0.8624
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10021705 [exp]	29.5	0.8597
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10023718 [exp]	29.7	0.8392
AT4G30890		UBP24	ubiquitin-specific protease 24...		Lus10016360 [exp]	30.7	0.8183
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10007498 [exp]	33.2	0.8616
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10025091 [exp]	33.9	0.8584
AT5G01460			LMBR1-like membrane protein (....		Lus10002488 [exp]	36.5	0.8245
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10023165 [exp]	37.9	0.8273

Compare expression of checked genes

Lus10004814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.