Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11210 323 / 2e-112 SGNH hydrolase-type esterase superfamily protein (.1) AT2G38180 294 / 5e-100 SGNH hydrolase-type esterase superfamily protein (.1) AT5G62930 177 / 4e-55 SGNH hydrolase-type esterase superfamily protein (.1) AT5G45920 169 / 4e-52 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040197 [exp] 315 / 8e-109 AT3G11210 402 / 5e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10028290 [exp] 313 / 4e-108 AT3G11210 402 / 2e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10035506 [exp] 275 / 4e-91 AT3G11210 244 / 7e-79 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027675 [exp] 179 / 8e-56 AT5G62930 414 / 2e-148 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027790 [exp] 174 / 1e-52 AT2G38180 194 / 1e-59 SGNH hydrolase-type esterase superfamily protein (.1) Lus10000525 [exp] 163 / 2e-49 AT5G45920 337 / 4e-118 SGNH hydrolase-type esterase superfamily protein (.1) Lus10013941 [exp] 106 / 4e-28 AT5G45920 257 / 1e-87 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027793 [exp] 89 / 2e-22 AT3G11210 78 / 1e-18 SGNH hydrolase-type esterase superfamily protein (.1) Lus10039938 [exp] 66 / 2e-13 AT5G62930 180 / 1e-58 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G100300 [exp] 355 / 4e-125 AT3G11210 327 / 8e-114 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116100 [exp] 353 / 5e-124 AT3G11210 337 / 9e-118 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G068000 [exp] 335 / 5e-117 AT3G11210 419 / 5e-150 SGNH hydrolase-type esterase superfamily protein (.1) Potri.010G189300 [exp] 323 / 2e-112 AT3G11210 414 / 4e-148 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116000 [exp] 313 / 9e-109 AT3G11210 306 / 1e-105 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G115800 [exp] 312 / 4e-108 AT3G11210 307 / 4e-106 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G081900 [exp] 181 / 1e-56 AT5G62930 403 / 3e-144 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G063800 [exp] 160 / 2e-48 AT5G45920 357 / 6e-126 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G053800 [exp] 159 / 3e-48 AT5G45920 329 / 3e-115 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G115900 [exp] 64 / 3e-13 AT3G11210 58 / 2e-11 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10004815 pacid=23158610 polypeptide=Lus10004815 locus=Lus10004815.g ID=Lus10004815.BGIv1.0 annot-version=v1.0 ATGGTGGGTCCAGCAAGGCCACAATTCGTGCTGTTCGGATCCTCAATCGTCGAGCTCAGCTTCAGCAATGGCGGCTGGGGCTCTATCCTCTCCCATATTT ACGCTCGTAAGGCAGATATAATACTGCGAGGATACTCCGGCTGGAACTCCAGGCGAGCTCTCCAAGTCCTCGATAAAGTCTTCCCCAAAGACGCGCAAGT TCAGCCTGCCTTGATCATTGTCTACTTCGGCGGCAACGATTCCATCCACCCGCACGAAACCGGCCTCGGCCCTCACGTACCTCTCCCTGAGTTCCTCGAC AATATGAGGAAGATCATCCTCCATCTTCAGAGCCTATCCGATAAGACCCGGTTGATTTGCCTGACTGCTCCCCCGGTGGACGAGGACCTTATGAGCAGAA CTTACGGGGACTTCTGGAGTTCGGTTCGGAGCAACAAAGCGTGCGGGATATACTCGGAAGCTACGATGAAGTTGTGCGAGGAGATGGGTGTAAAAGGAGT AGATCTATGGACTGCAATTCAGCAAGCTGACAACTGGCAGAAGGCCTGCTTCGTGGATGGGATCCATCTGACCGAGGAAGGGAGCAAAGTGGTGGCGAAG CAGATACTGGACGCAGTCAAGGATGCAGATTGGGAACCCAGTCTGTATTGTCAAGCATTGCCATTTGAATTCGCTGAGGATTCGCCGTATGATCCATTGT GCAGCAAAGGCAAACCCGTTAACATCTGCACTACTTTCTTCTTCAACAGAATTGCTCCCTGGGAATAA
AA sequence Show only first row Show all	>Lus10004815 pacid=23158610 polypeptide=Lus10004815 locus=Lus10004815.g ID=Lus10004815.BGIv1.0 annot-version=v1.0 MVGPARPQFVLFGSSIVELSFSNGGWGSILSHIYARKADIILRGYSGWNSRRALQVLDKVFPKDAQVQPALIIVYFGGNDSIHPHETGLGPHVPLPEFLD NMRKIILHLQSLSDKTRLICLTAPPVDEDLMSRTYGDFWSSVRSNKACGIYSEATMKLCEEMGVKGVDLWTAIQQADNWQKACFVDGIHLTEEGSKVVAK QILDAVKDADWEPSLYCQALPFEFAEDSPYDPLCSKGKPVNICTTFFFNRIAPWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11210			SGNH hydrolase-type esterase s...		Lus10004815 [exp]	0	1
AT2G38695			unknown protein		Lus10022334 [exp]	4.0	0.7933
AT1G29850			double-stranded DNA-binding fa...		Lus10004609 [exp]	8.1	0.8215
AT1G54730			Major facilitator superfamily ...		Lus10035354 [exp]	9.7	0.8399
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	11.4	0.8401
					Lus10007298 [exp]	16.4	0.8175
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	17.0	0.7758
AT2G27830			unknown protein		Lus10000385 [exp]	19.5	0.7733
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10042883 [exp]	19.5	0.8077
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10032655 [exp]	20.2	0.7564
					Lus10012945 [exp]	24.5	0.8168

Compare expression of checked genes

Lus10004815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.