Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01470 325 / 1e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT2G26810 46 / 1e-05 Putative methyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002489 [exp] 446 / 9e-159 AT5G01470 343 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10033051 [exp] 161 / 9e-48 ND / Lus10003831 [exp] 159 / 1e-45 ND / Lus10006395 [exp] 155 / 2e-45 ND / Lus10024749 [exp] 154 / 2e-45 ND / Lus10027052 [exp] 135 / 4e-39 ND / Lus10021791 [exp] 128 / 9e-37 ND / Lus10036998 [exp] 137 / 6e-36 AT2G44220 247 / 9e-77 Protein of Unknown Function (DUF239) (.1) Lus10002987 [exp] 122 / 5e-34 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G100100 [exp] 367 / 5e-128 AT5G01470 338 / 4e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.005G109000 [exp] 51 / 3e-07 AT1G63855 261 / 5e-89 Putative methyltransferase family protein (.1.2.3) Potri.009G068400 [exp] 42 / 0.0002 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10004816 pacid=23158601 polypeptide=Lus10004816 locus=Lus10004816.g ID=Lus10004816.BGIv1.0 annot-version=v1.0 ATGGACATAGCGCTTTTCTCCCCGTCGGCGCTCTTCTCTGCCGGCGATGACGACGCCTCCACTGATGAGGAGACGACGGAGACTGAGCAGCAGACCTACG TGGAACGGTGGCATAGTTTCCCTGGAATGGAGTTGGCCATTAGAGAGTTTTCATTCCACCAATTGAATGCCAATTTGCTGTGGCCAGGAACGTTTTCCTT CGCAGAATGGTTGGTTCAGCAACGGCCCTTGATTGAAGGCCGCCGCTGCCTTGAACTGGGCAGTGGGACTGGAACTTTGGCTATATTTGTCCGCAAGTCG TTCAATCTAGACATCACGTCATCAGATTATGATGATCAGGAGATTGAAGATAACATAGCTCACAACTGCCAAGAGAATGGTGTTACGCCTGTTCTTCCTC ACATCAAGCATACGTGGGGAGATATTTTTCCAGCTGCTGACCCTGATTGGGACCTGATCATAGCAAGTGATATCCTCCTGTATGTGAAACAGTACCAGAA CCTGATAAAGAATCTTTCCCATCTGCTCCACAATCATAAACCAAGAAGAGATGGAACTGCTTCTTCCATTGACAGGCAAGAAAATGCAGGAGGAGGAGGC ATCGAAAGACTACCCAGCCCGGCATTCCTAATGAGCTGGAGAAGACGAATAGGGAAAGAGGACGAATCGCTCTTCTTCAGTGGCTGCGAAGGTGCCAATC TTCATGTCCAGCACCTTGGATCCCGTGTTTACTTGATCCATCCCAGGAATCAGCTCTCATCAAACCAACCGGATCAGCCTTCCGTACGGTGCCCCCACTC TGCTGCTGCTGCGGCTGAAGTTGATGCCGGTGACGGAATTGATTACTCCGACTGGTTTTTATCCGATGATGTGTACGACACTATCGGTGAAGTGGCGCAA GCAGCAAAACAGATTGCTTTGACGCTTAATTTCCATCTGATCAAAGGGTTCAACAAAAGCAATGACTCGGAAAAGGAGTGTGGGGTGTATCTTTATTACT CACGCGGACCTGTTCGCAAGTCTGAGGGTTCAGATCCGTCCAAACCTGCTACGAAGTCAAAGAAGTGTAATTGCCCGTGTGATCAAGGGTGGTAG
AA sequence Show only first row Show all	>Lus10004816 pacid=23158601 polypeptide=Lus10004816 locus=Lus10004816.g ID=Lus10004816.BGIv1.0 annot-version=v1.0 MDIALFSPSALFSAGDDDASTDEETTETEQQTYVERWHSFPGMELAIREFSFHQLNANLLWPGTFSFAEWLVQQRPLIEGRRCLELGSGTGTLAIFVRKS FNLDITSSDYDDQEIEDNIAHNCQENGVTPVLPHIKHTWGDIFPAADPDWDLIIASDILLYVKQYQNLIKNLSHLLHNHKPRRDGTASSIDRQENAGGGG IERLPSPAFLMSWRRRIGKEDESLFFSGCEGANLHVQHLGSRVYLIHPRNQLSSNQPDQPSVRCPHSAAAAAEVDAGDGIDYSDWFLSDDVYDTIGEVAQ AAKQIALTLNFHLIKGFNKSNDSEKECGVYLYYSRGPVRKSEGSDPSKPATKSKKCNCPCDQGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10004816 [exp]	0	1
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10017682 [exp]	6.2	0.8762
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	6.2	0.8717
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	8.4	0.8379
AT4G21585		ENDO4	endonuclease 4 (.1)		Lus10018451 [exp]	11.4	0.8642
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10021598 [exp]	12.0	0.8712
AT3G54970			D-aminoacid aminotransferase-l...		Lus10040366 [exp]	12.2	0.8530
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	15.1	0.8496
AT1G09300			Metallopeptidase M24 family pr...		Lus10031427 [exp]	17.3	0.8557
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Lus10002492 [exp]	17.9	0.7975
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10027668 [exp]	18.1	0.8713

Compare expression of checked genes

Lus10004816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.