Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17930 56 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) AT2G25010 49 / 5e-06 Aminotransferase-like, plant mobile domain family protein (.1) AT2G04865 49 / 5e-06 Aminotransferase-like, plant mobile domain family protein (.1) AT1G51538 48 / 9e-06 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 46 / 3e-05 hydrolases;protein serine/threonine phosphatases (.1) AT1G50770 42 / 0.0006 Aminotransferase-like, plant mobile domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008761 [exp] 411 / 4e-143 AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1) Lus10012081 [exp] 254 / 1e-83 AT1G17930 53 / 8e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10027047 [exp] 192 / 2e-56 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10020970 [exp] 183 / 1e-53 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1) Lus10008733 [exp] 172 / 7e-53 ND / Lus10043226 [exp] 168 / 4e-51 ND / Lus10042711 [exp] 146 / 1e-43 AT2G25010 50 / 4e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10024786 [exp] 142 / 2e-41 ND 62 / 1e-11 Lus10003430 [exp] 144 / 5e-40 AT5G51100 60 / 6e-10 Fe superoxide dismutase 2 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10004818 pacid=23158618 polypeptide=Lus10004818 locus=Lus10004818.g ID=Lus10004818.BGIv1.0 annot-version=v1.0 ATGCCAGATGACGACGTGGAAGAGTTACTCAGTGGCTATGAGTCTGATACCTATCTGCCTCCACCGTTTAGAGTTTCCATTGGTTCATCTCATGTTTCAG CGAGCGTTGGTGTTGCAGTTGGGAGAGATGCTCATTTTGCTCCTGCCACGAGTACACATGATGTACCGATAGATGAGGAGGTCGAGACTATTGGGGTCGG GGGAAACCTTTCCCGCAGTTGGCTGCTTGAGTCGGGGATAGAGGATGGTGACCCGATTTCGACCAGTGTGATTCCCAGTTTCGGGGGTCACATTGCACAT TATCTGTGGGAGGTCGGTCCGGACTATCGTAACATCTGCGAGTTCAGGTTCTACACCCGTCCGGGTCATCTCACGCATGTGATGAGATTTCAGTCTCAGA CACCGACACTTGAGATGATGATGTCTACCTCTGGACTTCTCCATTTGGGTCGTTTTGGTATGACTGATCAACTAGACGAGACACTGATCCACACTTTTGT TGAGAGGTGGCAGCCAGATACTAACACGTTCTGCATGCCTTTCGTAGAGATGACCATCACACTTCATGATGTATTACATATTCTCCGTATCCCAGTGCAC AAACGTCCACTTCACATTCCTCGATCCAGCGTGGACCTGCAGGTCGATATAGCTAGGGCTCTCTGTATCCATCCTGGGGATTTGAAGTTGCCAGTTGGAG GCACTACAGGTGGTGATGTCCGATACCTTTGGCTGAAGGGTGCTACGATGCATGAGAAGTCGATGTTAGTCGTGGGGAGCGGTTTAGTGGATGAGGATGC ATACAGGGTCTTAGTTGGGCGGTGGAGCAGTAGCAAGCTGTCAGATAGATCATACAAGTTCATGCACCGTCATCTGCTTGATGATATGACCGCACAGGAT GTGACCTGGCTGCCATTTGGGCCACGTCCCGAGGTAGTGGCGAATCCGAAAAGGTCCAGATTCCATAACCACCATGGTCTCTCGCATGGTGTGTTCCATA GCTACCCCAGTCTGGCTAGGACGGTGTCTAGCACGCCGTCATACACCTTATGA
AA sequence Show only first row Show all	>Lus10004818 pacid=23158618 polypeptide=Lus10004818 locus=Lus10004818.g ID=Lus10004818.BGIv1.0 annot-version=v1.0 MPDDDVEELLSGYESDTYLPPPFRVSIGSSHVSASVGVAVGRDAHFAPATSTHDVPIDEEVETIGVGGNLSRSWLLESGIEDGDPISTSVIPSFGGHIAH YLWEVGPDYRNICEFRFYTRPGHLTHVMRFQSQTPTLEMMMSTSGLLHLGRFGMTDQLDETLIHTFVERWQPDTNTFCMPFVEMTITLHDVLHILRIPVH KRPLHIPRSSVDLQVDIARALCIHPGDLKLPVGGTTGGDVRYLWLKGATMHEKSMLVVGSGLVDEDAYRVLVGRWSSSKLSDRSYKFMHRHLLDDMTAQD VTWLPFGPRPEVVANPKRSRFHNHHGLSHGVFHSYPSLARTVSSTPSYTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17930			Aminotransferase-like, plant m...		Lus10004818 [exp]	0	1
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10030717 [exp]	4.9	0.7287
AT5G43370		PHT1;2, APT1, P...	ARABIDOPSIS PHOSPHATE TRANSPOR...		Lus10027631 [exp]	5.3	0.7449
AT3G11010		AtRLP34	receptor like protein 34 (.1)		Lus10002752 [exp]	5.9	0.6225
AT5G45840			Leucine-rich repeat protein ki...		Lus10015277 [exp]	9.5	0.7569
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10038912 [exp]	11.5	0.7348
AT1G25240			ENTH/VHS/GAT family protein (....		Lus10019132 [exp]	13.4	0.6833
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10016563 [exp]	13.4	0.7021
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10031548 [exp]	23.8	0.7056
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10033678 [exp]	24.5	0.6946
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10001395 [exp]	29.2	0.6871

Compare expression of checked genes

Lus10004818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.