Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51860 489 / 3e-171 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT2G38170 473 / 8e-165 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) AT5G01490 385 / 1e-130 ATCAX4, CAX4 cation exchanger 4 (.1) AT1G55730 301 / 7e-98 ATCAX5 cation exchanger 5 (.1.2) AT3G13320 297 / 2e-96 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55720 287 / 3e-92 ATCAX6 cation exchanger 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002490 [exp] 721 / 0 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10027791 [exp] 607 / 0 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10035507 [exp] 592 / 0 AT3G51860 579 / 0.0 cation exchanger 3 (.1) Lus10040674 [exp] 432 / 8e-149 AT2G38170 511 / 2e-180 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10033396 [exp] 287 / 3e-91 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10034853 [exp] 288 / 1e-90 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10027136 [exp] 279 / 1e-88 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10018231 [exp] 273 / 2e-87 AT3G51860 365 / 1e-123 cation exchanger 3 (.1) Lus10006068 [exp] 269 / 1e-81 AT3G13320 516 / 1e-176 cation exchanger 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G099900 [exp] 537 / 0 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.016G115500 [exp] 532 / 0 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.001G251200 [exp] 482 / 2e-168 AT3G51860 490 / 7e-172 cation exchanger 3 (.1) Potri.009G045800 [exp] 479 / 1e-167 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.001G469800 [exp] 301 / 8e-98 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.011G166900 [exp] 295 / 1e-95 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.010G249200 [exp] 285 / 8e-92 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10004819 pacid=23158606 polypeptide=Lus10004819 locus=Lus10004819.g ID=Lus10004819.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCGAACCAAGAAACGGCGCCATGGCTGCTGGAGAACGGCAGCTACAAGGTCCTCACCAAGGAGTCGAGGTACCACGCTCACGGAAACAGCC ACCACGGCCGCACCGCTCATAACTTGTCCTCGTCTTCGTTGCGGAAGAAATCGGATCTCAAGCTCGTCTCCAGAGTCCGGTGCCGCTTGCTCCGATCCTT TTTAGCTAATCTCCAGGAAGTGATCCTCGGGACCAAGCTTTCCGTTCTGTTCCCGGCCATCCCTCTCGCTATAATCGCCAACTACTGCAACTTTGGAAGG CCGTGGATTTTTGCTCTGAGCTTGCTGGCGCTCACGCCACTGGCTGAACGTGTCAGCTTTTTGACAGAGCAAATTGCTTATTTCACCGGTCCAACAGTGG GAGGGCTGCTAAATGCAACATGTGGGAACGCAACTGAGCTGATCATCGCCATATTTGCACTGACCAGGAACAAAATAGACGTGGTGAAATACTCCCTCCT GGGTTCTATACTCTCCAACCTTCTCCTTGTACTTGGTACCTCCCTTTTCTGTGGTGGCCTCGGCAGCCTCGGCAAGCAGCAGAAATACGACAGGAGACAA GCAGATGTTAGCATGCTGATGCTTTTCCTTGGGCTGTTATGCCATTTGTTGCCACTTCTGTTCCAATTTGCAGCGGGAGACAACGCTGCTCTCACCACAG TTGCCTCGCTCCAGCTGTCGAGAGCTAGCAGCATTGTCATGCTCATTGGTTACGTGGTTTACATCGTCTTTCAGCTGTGGACTCATCGGCGACTCTTTGA AGCAGAAGAGGTAGAGGAAGATGATGATGATGATCAGGAAGAAGAAGAGACAGCCGTGATAGGATTCTGGAGCGGATTTGCCTGGCTGGTTGGAATGACT ATTGTCATTGCGGTTCTGTCGGAATATGTTGTGGCCACCATAGAGGATGCTTCGAATTCGTGGGGGCTTTCTGTAAGCTTCATTAGCATTATTCTACTGC CAATTGTGGGAAATGCTGCTGAACATGCTGGAGCTATCATCTTTGCTTTCAAAGACAAGTTGGACATATCACTTGGTGTTGCTCTGGGTTCTTCATGCCA AATCTCCTTGTTTGTGATTCCACTATGTGTGATTGTTGCTTGGATAACTGGTATTGACATGGATCTGAATTTCAACATCGTTGAAACTGGGAGCCTTGTT ATAGCAATCATTACCACAGCTTTCACTTTACAGGATGGTACCTCCAACTACTTGAAAGGACTAATCTTGCTGCTCTGTTACGTCGTCATCGGAGCATGCT TTTTTGTCACCACCTCACCTCCAAACCAAGGGAATGGCATCAAAGACTCGGTCATGAATTCAGTTACAGGAATTTCAGCTGCTTAG
AA sequence Show only first row Show all	>Lus10004819 pacid=23158606 polypeptide=Lus10004819 locus=Lus10004819.g ID=Lus10004819.BGIv1.0 annot-version=v1.0 MAAPNQETAPWLLENGSYKVLTKESRYHAHGNSHHGRTAHNLSSSSLRKKSDLKLVSRVRCRLLRSFLANLQEVILGTKLSVLFPAIPLAIIANYCNFGR PWIFALSLLALTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAIFALTRNKIDVVKYSLLGSILSNLLLVLGTSLFCGGLGSLGKQQKYDRRQ ADVSMLMLFLGLLCHLLPLLFQFAAGDNAALTTVASLQLSRASSIVMLIGYVVYIVFQLWTHRRLFEAEEVEEDDDDDQEEEETAVIGFWSGFAWLVGMT IVIAVLSEYVVATIEDASNSWGLSVSFISIILLPIVGNAAEHAGAIIFAFKDKLDISLGVALGSSCQISLFVIPLCVIVAWITGIDMDLNFNIVETGSLV IAIITTAFTLQDGTSNYLKGLILLLCYVVIGACFFVTTSPPNQGNGIKDSVMNSVTGISAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38170		RCI4, ATCAX1, C...	RARE COLD INDUCIBLE 4, cation ...		Lus10004819 [exp]	0	1
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Lus10001043 [exp]	5.4	0.7624
AT1G21400			Thiamin diphosphate-binding fo...		Lus10000772 [exp]	9.7	0.7361
					Lus10028567 [exp]	15.1	0.7258
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006594 [exp]	18.1	0.7254
					Lus10023972 [exp]	18.5	0.6694
AT5G11420			Protein of unknown function, D...		Lus10013112 [exp]	20.0	0.7061
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006593 [exp]	20.4	0.7245
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10039119 [exp]	24.7	0.6703
ATCG00120		ATCG00120.1, AT...	ATP synthase subunit alpha (.1...		Lus10004894 [exp]	25.2	0.7113
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10001686 [exp]	26.5	0.7112

Compare expression of checked genes

Lus10004819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.