Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51870 434 / 1e-151 Mitochondrial substrate carrier family protein (.1) AT5G01500 430 / 8e-150 TAAC thylakoid ATP/ADP carrier (.1) AT4G32400 146 / 6e-40 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT4G01100 142 / 1e-38 ADNT1 adenine nucleotide transporter 1 (.1.2) AT2G37890 136 / 2e-36 Mitochondrial substrate carrier family protein (.1) AT4G26180 135 / 2e-36 Mitochondrial substrate carrier family protein (.1) AT3G53940 131 / 1e-34 Mitochondrial substrate carrier family protein (.1) AT3G55640 130 / 2e-34 Mitochondrial substrate carrier family protein (.1) AT1G14560 125 / 2e-32 Mitochondrial substrate carrier family protein (.1) AT5G61810 124 / 3e-32 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035509 [exp] 484 / 8e-171 AT3G51870 504 / 3e-179 Mitochondrial substrate carrier family protein (.1) Lus10027789 [exp] 432 / 3e-151 AT3G51870 462 / 8e-164 Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 149 / 4e-41 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10004689 [exp] 146 / 3e-40 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10033948 [exp] 146 / 5e-40 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 146 / 5e-40 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10008572 [exp] 142 / 9e-39 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 142 / 1e-38 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 142 / 3e-38 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G115400 [exp] 477 / 1e-168 AT5G01500 517 / 0.0 thylakoid ATP/ADP carrier (.1) Potri.006G099800 [exp] 477 / 2e-168 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.001G094100 [exp] 150 / 1e-41 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 148 / 5e-41 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 147 / 2e-40 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 146 / 3e-40 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G091900 [exp] 143 / 4e-39 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 142 / 6e-39 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 142 / 1e-38 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 140 / 5e-38 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10004820 pacid=23158619 polypeptide=Lus10004820 locus=Lus10004820.g ID=Lus10004820.BGIv1.0 annot-version=v1.0 ATGAGGGAAGAGAGAGCCGTTTTATCGTTCCGAAGCCTCCCGGAGCTGAAGTCGGCGCAGTGTAGGACTCCGATAGAATTCAATGCTTCTTTATTGAAGG GAGCTCGGCTCAGTTGCGCTGGAGGCGGGAAGGGGAATCTCGCTGTTTTTGCTTCCATTTCGATGGTGGATGATGGCAAGGGAGAACCGGGAGGAGAGTT CGCGCCGACTACCGCGCAGCTGATGAAGCATCCGCTGGCTATGCTGGCTTACGTTCCGCGAGGCGCCGCTCTTTTTATGGCCGGCGCCGTCTCTGGAGCC GTGGCGAAGAGTTTCACCGCTCCGCTCGATCGCGTTAAGCTTCTTATGCAGACGCATGGTGTGCGGGTTGGGCAAGAAAGCAGTAAGAAGGCAATTGGTT TCGTCGAGGCTCTAGCATTAATTGGAAAAGAAGAAGGGATTAAGGGATATTGGAAAGGAAACCTCCCTCAGGTTATTCGAATCGTCCCCTATAGTGCAGT GCAGCTTTTCAGTTACGAGTTTTACAAGAAACTTTTCAAGGGAAAAGATGGAGAACTGTCTGTTATTGGAAGACTTGCAGCAGGCGCTTGTGCAGGCATG ACATCCACTTTTGTTACATACCCTTTAGATGTCTTAAGGTTACGCTTGGCCGTGGAAACAGGACACCGGACCATGACTGAGATTGCTTTGACAATGCTGC GAGAGGAAGGAGTTGCATCATTTTACTGTGGTCTCGGGCCTTCCCTTCTCAGCATCGCTCCATATATTGCCGTGAACTTTTGCATGTTTGACTTAGTGAA GAAGTCTCTGCCAGAGAAATATCAGCAGACGGCTCAAGCATCTGTGATAACAGCTGTGGTTTCTGCTGCTGTTGCGACACTGACATGCTATCCATTGGAC ACAGTGAGAAGACAGATGCAAGTGCGGAATGCACCTTATAAAAACATTTTTTATGCCTTTCCAGGAATTGTGGAACGAGATGGAATAATCGGCTTGTACA GGGGGTTTGTGCCCAATGCATTGAAGAGCTTACCGAATAACAGACTCCTACGCCAATCCACGCGCGAGTTTAGTTTGCACGCGCAGGTGATTCATCTGCT TGTTTCTGTGGGTTTTTCCCACGATTCGCCTTCTCTGCCGCCGAGAAATCGACTCATCCCTGTTTCATCTGATTCTGCCGCTATGGTTAAATGCCAATGG AGGTTATAG
AA sequence Show only first row Show all	>Lus10004820 pacid=23158619 polypeptide=Lus10004820 locus=Lus10004820.g ID=Lus10004820.BGIv1.0 annot-version=v1.0 MREERAVLSFRSLPELKSAQCRTPIEFNASLLKGARLSCAGGGKGNLAVFASISMVDDGKGEPGGEFAPTTAQLMKHPLAMLAYVPRGAALFMAGAVSGA VAKSFTAPLDRVKLLMQTHGVRVGQESSKKAIGFVEALALIGKEEGIKGYWKGNLPQVIRIVPYSAVQLFSYEFYKKLFKGKDGELSVIGRLAAGACAGM TSTFVTYPLDVLRLRLAVETGHRTMTEIALTMLREEGVASFYCGLGPSLLSIAPYIAVNFCMFDLVKKSLPEKYQQTAQASVITAVVSAAVATLTCYPLD TVRRQMQVRNAPYKNIFYAFPGIVERDGIIGLYRGFVPNALKSLPNNRLLRQSTREFSLHAQVIHLLVSVGFSHDSPSLPPRNRLIPVSSDSAAMVKCQW RL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51870			Mitochondrial substrate carrie...		Lus10004820 [exp]	0	1
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10042287 [exp]	6.2	0.8792
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10038714 [exp]	8.8	0.8320
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10022906 [exp]	9.9	0.8679
AT5G19150			pfkB-like carbohydrate kinase ...		Lus10021933 [exp]	11.0	0.8601
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10010990 [exp]	15.5	0.8760
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	17.1	0.8681
AT4G00360		ATT1, CYP86A2	"cytochrome P450, family 86, s...		Lus10014768 [exp]	18.3	0.8532
AT3G46210			Ribosomal protein S5 domain 2-...		Lus10009221 [exp]	20.2	0.8518
AT1G33110			MATE efflux family protein (.1...		Lus10003869 [exp]	20.4	0.8366
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10009186 [exp]	21.3	0.8758

Compare expression of checked genes

Lus10004820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.