Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01520 362 / 5e-128 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT3G47160 313 / 8e-109 RING/U-box superfamily protein (.1.2) AT5G58787 293 / 1e-100 RING/U-box superfamily protein (.1.2) AT1G24440 201 / 2e-64 RING/U-box superfamily protein (.1) AT1G13195 195 / 4e-62 RING/U-box superfamily protein (.1.2) AT3G48030 48 / 3e-06 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT5G05280 46 / 3e-06 RING/U-box superfamily protein (.1) AT3G10910 45 / 7e-06 RING/U-box superfamily protein (.1) AT5G37280 45 / 1e-05 RING/U-box superfamily protein (.1) AT5G57750 45 / 2e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002491 [exp] 467 / 2e-169 AT5G01520 386 / 1e-137 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10005859 [exp] 325 / 1e-113 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2) Lus10001209 [exp] 320 / 1e-111 AT3G47160 369 / 9e-131 RING/U-box superfamily protein (.1.2) Lus10036934 [exp] 227 / 2e-74 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10037053 [exp] 226 / 4e-74 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10006447 [exp] 223 / 3e-73 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10011390 [exp] 223 / 4e-73 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10036937 [exp] 209 / 2e-67 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1) Lus10006253 [exp] 207 / 2e-66 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G099600 [exp] 396 / 2e-141 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.016G115300 [exp] 395 / 3e-141 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.009G045400 [exp] 347 / 2e-122 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2) Potri.004G041200 [exp] 333 / 1e-116 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.001G250800 [exp] 329 / 4e-115 AT3G47160 344 / 4e-121 RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 322 / 4e-112 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.010G053000 [exp] 235 / 1e-77 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.008G181300 [exp] 217 / 1e-70 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1) Potri.010G052700 [exp] 214 / 1e-69 AT1G24440 349 / 1e-122 RING/U-box superfamily protein (.1) Potri.012G093300 [exp] 213 / 4e-69 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10004821 pacid=23158595 polypeptide=Lus10004821 locus=Lus10004821.g ID=Lus10004821.BGIv1.0 annot-version=v1.0 ATGCGGAAATCGTTTAAGGATTCTCTCAAAGCTCTTGAAGCTGATATTCAGTTCGCTAATACTCTGGCATCTGTTTATCCTACCGAGTATGATGGCGGGT GTCTTCAGATGAGATTATCATACAGCCCTGCAGCTCACATTTTCCTGTTTCTTGTCCAATGGACAGACTGCCATCTAGCCGGTGCCTTGGGATTGCTTCG AATTCTTATATACAAGGCTTATGAGGATGGGAAGACAAGCATGTCGATCCAGGAAAGGAAAGCTAGTTTGAGGGAGTTCTATGGAGTTGTGTTTCCTTCT TTGTTGCAACTTCAGGGAGGGATCACTGACGTGGACGACAGGAAGCAGAGGGAGCTATGCGCCAAGTACAGCAAGAAGAAAGATTGCGTGACAACGGACA AGGGGAAGCTCTCGGAAATCGACCTCGAAAGAGAGGAGGAATGTGGGATCTGCATGGAGAACAACACCAAAGTGGTGCTTCCTAAATGCAGCCATTCTCT CTGCCTCAAGTGCTACAAAACCTGGCGAGCAAGGTCGCAGTCGTGTCCATTCTGCAGGGACAGCCTGAAGAGGGTGAACTCAGGAGATCTGTGGGTGTAC ACAAGCAGCAATGAAATAGCTGACCTCTCGGCTATAACGAGGGAGAACTTGAAGAGGCTGTTCATGTACATTGATAAACTCCCTCTGATAGTGCCGGATC GGACTGTTGTTTCCTATGACTTAAGGTACCAGTAG
AA sequence Show only first row Show all	>Lus10004821 pacid=23158595 polypeptide=Lus10004821 locus=Lus10004821.g ID=Lus10004821.BGIv1.0 annot-version=v1.0 MRKSFKDSLKALEADIQFANTLASVYPTEYDGGCLQMRLSYSPAAHIFLFLVQWTDCHLAGALGLLRILIYKAYEDGKTSMSIQERKASLREFYGVVFPS LLQLQGGITDVDDRKQRELCAKYSKKKDCVTTDKGKLSEIDLEREEECGICMENNTKVVLPKCSHSLCLKCYKTWRARSQSCPFCRDSLKRVNSGDLWVY TSSNEIADLSAITRENLKRLFMYIDKLPLIVPDRTVVSYDLRYQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	0	1
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10014715 [exp]	2.4	0.8870
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	2.8	0.8965
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10034997 [exp]	4.0	0.8759
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10042247 [exp]	4.9	0.8856
AT5G35460			unknown protein		Lus10017161 [exp]	5.1	0.8705
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10031553 [exp]	5.5	0.8726
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	5.7	0.8834
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	6.9	0.8707
AT1G18835	ZF_HD	MIF3	mini zinc finger 3, mini zinc ...		Lus10002058 [exp]	7.9	0.8769
AT3G04530		ATPPCK2, PEPCK2...	phosphoenolpyruvate carboxylas...		Lus10021190 [exp]	8.2	0.8485

Compare expression of checked genes

Lus10004821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.