Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08980 190 / 1e-62 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G53530 96 / 2e-25 Peptidase S24/S26A/S26B/S26C family protein (.1.2) AT1G29960 84 / 1e-20 AGL64 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G23465 77 / 5e-18 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G06870 59 / 1e-10 Plsp2A plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) AT2G30440 58 / 3e-10 Plsp2B, TPP plastidic type I signal peptidase 2B, thylakoid processing peptide (.1) AT1G06200 50 / 9e-08 Peptidase S24/S26A/S26B/S26C family protein (.1) AT3G24590 50 / 1e-07 PLSP1 plastidic type i signal peptidase 1 (.1) AT2G31140 48 / 4e-07 Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002492 [exp] 318 / 4e-113 AT3G08980 191 / 5e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10005571 [exp] 83 / 3e-20 AT1G53530 213 / 1e-71 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10013703 [exp] 83 / 8e-19 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10025393 [exp] 72 / 2e-16 AT1G53530 169 / 3e-54 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10032753 [exp] 56 / 2e-09 AT1G06870 379 / 3e-125 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10033448 [exp] 52 / 4e-09 AT1G53530 110 / 1e-32 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10023651 [exp] 50 / 1e-07 AT3G24590 318 / 2e-109 plastidic type i signal peptidase 1 (.1) Lus10034925 [exp] 50 / 1e-07 AT3G24590 316 / 1e-108 plastidic type i signal peptidase 1 (.1) Lus10011671 [exp] 47 / 3e-07 AT2G30440 172 / 7e-54 plastidic type I signal peptidase 2B, thylakoid processing peptide (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G115100 [exp] 226 / 1e-76 AT3G08980 204 / 3e-68 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.001G380400 [exp] 94 / 7e-25 AT1G53530 227 / 3e-77 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.005G092900 [exp] 94 / 8e-25 AT1G53530 189 / 5e-62 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.007G071400 [exp] 84 / 6e-21 AT1G53530 194 / 7e-64 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.014G036400 [exp] 61 / 2e-11 AT1G06870 377 / 8e-130 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.002G079600 [exp] 52 / 2e-08 AT3G24590 177 / 3e-55 plastidic type i signal peptidase 1 (.1) Potri.006G157900 [exp] 51 / 7e-08 AT3G24590 357 / 5e-124 plastidic type i signal peptidase 1 (.1) Potri.018G081800 [exp] 50 / 2e-07 AT3G24590 372 / 3e-130 plastidic type i signal peptidase 1 (.1) Potri.002G037900 [exp] 42 / 8e-05 AT1G06200 264 / 2e-90 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.005G225100 [exp] 41 / 0.0001 AT2G31140 274 / 2e-94 Peptidase S24/S26A/S26B/S26C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0299 [flax] [poplar] Peptidase_SF PF00717 [flax] [poplar] Peptidase_S24 Peptidase S24-like
Representative CDS sequence Show only first row Show all	>Lus10004822 pacid=23158626 polypeptide=Lus10004822 locus=Lus10004822.g ID=Lus10004822.BGIv1.0 annot-version=v1.0 ATGGCAGCTCGTGAAGTCTTGGTTAGCGCCGCGAAGAAGTTCTTTCTTTTGGGTATCATTGGAATCCCAGTTACCGACCGATTGGCCAGCGTTGTTCCAG TTCGGGGTCAATCAATGTCGCCGACACTTAACCCCGATTCCGATTCCCTTTTCGATGATCGGGTTCTGGTAGAGAAATTGTGCCTCCAGCGGTATAGTTT TTCTCACGGCGACGTGGTTGTTTTCCGTTCTCCAGTTGATCATAAGGAGAAACTCGTCAAGAGGATAATTGGCTTGCCTGGTGACTGGGTTGGGACTCCT CATACGTATGATGTGGTCAAGGTTCCAGAAGGCCATTGCTGGGTTGAGGGAGGCAATATGATTCCCAGCATGGATTCCAGATCATTTGGCCCGATTCCAT TAGGTCTAGCGAGGGGAAGAGTGGTACGGATTGTATGGCCACCTCAAAGGATGGGGAAGGTAGAGCGAAAAGTACCGGAAGGCAGACTATGTCCTTCTAG ATGA
AA sequence Show only first row Show all	>Lus10004822 pacid=23158626 polypeptide=Lus10004822 locus=Lus10004822.g ID=Lus10004822.BGIv1.0 annot-version=v1.0 MAAREVLVSAAKKFFLLGIIGIPVTDRLASVVPVRGQSMSPTLNPDSDSLFDDRVLVEKLCLQRYSFSHGDVVVFRSPVDHKEKLVKRIIGLPGDWVGTP HTYDVVKVPEGHCWVEGGNMIPSMDSRSFGPIPLGLARGRVVRIVWPPQRMGKVERKVPEGRLCPSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Lus10004822 [exp]	0	1
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10039717 [exp]	22.2	0.6864
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10001460 [exp]	26.5	0.7063
AT1G59970			Matrixin family protein (.1)		Lus10014512 [exp]	28.7	0.6310
					Lus10021617 [exp]	33.2	0.6079
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10030475 [exp]	43.3	0.6169
					Lus10010342 [exp]	50.3	0.7210
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10027741 [exp]	65.7	0.6253
					Lus10015674 [exp]	66.2	0.6965
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013385 [exp]	82.3	0.6066
AT5G25340			Ubiquitin-like superfamily pro...		Lus10041040 [exp]	104.1	0.6773

Compare expression of checked genes

Lus10004822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.