Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40070 142 / 2e-36 unknown protein AT3G09000 104 / 9e-24 proline-rich family protein (.1) AT2G38160 91 / 4e-20 unknown protein AT5G01280 78 / 3e-15 unknown protein AT1G27850 54 / 2e-07 unknown protein AT3G08670 43 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002493 [exp] 597 / 0 AT2G40070 300 / 2e-95 unknown protein Lus10004390 [exp] 145 / 3e-40 AT2G40070 321 / 5e-107 unknown protein Lus10040188 [exp] 144 / 2e-37 AT2G40070 533 / 0.0 unknown protein Lus10030402 [exp] 142 / 1e-36 AT2G40070 561 / 0.0 unknown protein Lus10027767 [exp] 142 / 5e-36 AT2G40070 288 / 5e-86 unknown protein Lus10037838 [exp] 139 / 1e-35 AT2G40070 551 / 0.0 unknown protein Lus10035528 [exp] 136 / 4e-34 AT2G40070 280 / 4e-83 unknown protein Lus10024526 [exp] 62 / 4e-10 AT2G40070 66 / 2e-11 unknown protein Lus10011374 [exp] 58 / 1e-08 AT2G40070 151 / 8e-37 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190300 [exp] 151 / 7e-40 AT2G40070 368 / 6e-121 unknown protein Potri.008G066900 [exp] 150 / 9e-40 AT2G40070 321 / 1e-102 unknown protein Potri.016G114900 [exp] 144 / 3e-37 AT2G40070 352 / 7e-114 unknown protein Potri.010G177000 [exp] 67 / 9e-12 AT2G40070 82 / 9e-17 unknown protein Potri.010G056200 [exp] 56 / 6e-08 AT1G27850 240 / 1e-64 unknown protein Potri.016G139500 [exp] 54 / 2e-07 AT3G08670 245 / 2e-73 unknown protein Potri.008G178600 [exp] 48 / 2e-05 AT1G27850 567 / 0.0 unknown protein Potri.006G110700 [exp] 45 / 9e-05 AT3G08670 251 / 1e-75 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004824 pacid=23158617 polypeptide=Lus10004824 locus=Lus10004824.g ID=Lus10004824.BGIv1.0 annot-version=v1.0 ATGGTGACGACCAAGGACGAGGAGTTGTCACTGTTCTTCGAGCTTAGGAGACGCGAGAAGGAAATGGAGAAAAACAGTCTTCTTGTCGACCGTCCTGTTG CGATTGATGTATCTCCAGGAACTAGAGGCGGGGTTGCACCATTGATTCAGCAGATGGCGCCACTCTTTAAAAATGCAGCTGAAAAATTCTTGGATTCGGA GAATGAAAAATCGGATTATGATTGGCTTATTACACCACCAGGGACGCCACTTTTCCCATCCATGGAGATGGAGGGCCAGAGCGCTATGATGAATCAGCTT GGGATGAATGCTCGTCCCACTCTGTTGAAGTCGATGCTAACTAATATCCAGCAAGAGGCTCCGAGGATTAATGGAGCAACTAAAACAAAGATTATTGCTT TGCCATCTGCATTGAATTCGTCCAGTGCTGGTAACAGGAGATCTTCATTTTCTGGAGGACTAAAATCTGCTTCTAGACCTTCAACACCAACATTGCAACC CACTTTACCCTCAGCTAAGCCTGCACGATCTTCTACCCCTACAGGACGCCCCACATTGTCTTCCACAAAGCCAGCGGCTGCATCAGCAAGAACATCAACC CCTACAAGATCATCAACACCAACTGCAAGACACTCGTTACCATCTTCTAAGTCAACATCAAGATCATCAACTCCAACTTGTCGCTCATTAGCTCCTGTTA GTAGATCCTCTTCTGTGACAAGTTCAGCTTCAGTAGCATCCAAGAAACCAGTTCCATCACGTGGGATCTCACCAACAGTGAGGTCCAGGCCCTTGACACC TGGTGACATGCCAGGGTTGTCGCATGATGCACCACAGACTTCATTGCCAAAAAGGCCAGCTTCGGCTACCAAGGCAAGGCCTGGAGGTACTGGTGCCCGA TCATCTTCAACTGGACGACCAAGGCAACAGTCTTGCTCTCCTGCCAAGGGTAGAACCTCAAATGGGAGTGGCCCAGGTGGTAAGCTGCCTGTTTCTATCA AGAGCATCAAAACTACCGCCTGTGATTGCGATGATGTGAATCCAGTGCTGATGGGAACACAAAGCGTTGAAAGAGTAGTCAACATGAGAAAACTAGCACC ACCAAAGCAGGATGACCATCGCTCCTCTTACCAAAGCAACTCTGCTGCCAAGTCATCTTCCCATGACAGCACAGGATTCGGCAGATCTCTATCAAAGAAA TCGCTTGATATGGCAATGAGACATATGGATATCGGACGAAGCATTACAAGCAACCTTAGAGCTTCGTCTGCGAGATCGGATGGCTCCGCGAAGGGCAGAG CTCTCAGTGCTTCGGAATCTCCCCATGCTACAAGCAGTAACGCTAGCTCTGAGCCTAGTGTCAACAACACTTTCTTCGCAGAAGAGGAAGAAAATGGCAT CACTAGCTAA
AA sequence Show only first row Show all	>Lus10004824 pacid=23158617 polypeptide=Lus10004824 locus=Lus10004824.g ID=Lus10004824.BGIv1.0 annot-version=v1.0 MVTTKDEELSLFFELRRREKEMEKNSLLVDRPVAIDVSPGTRGGVAPLIQQMAPLFKNAAEKFLDSENEKSDYDWLITPPGTPLFPSMEMEGQSAMMNQL GMNARPTLLKSMLTNIQQEAPRINGATKTKIIALPSALNSSSAGNRRSSFSGGLKSASRPSTPTLQPTLPSAKPARSSTPTGRPTLSSTKPAAASARTST PTRSSTPTARHSLPSSKSTSRSSTPTCRSLAPVSRSSSVTSSASVASKKPVPSRGISPTVRSRPLTPGDMPGLSHDAPQTSLPKRPASATKARPGGTGAR SSSTGRPRQQSCSPAKGRTSNGSGPGGKLPVSIKSIKTTACDCDDVNPVLMGTQSVERVVNMRKLAPPKQDDHRSSYQSNSAAKSSSHDSTGFGRSLSKK SLDMAMRHMDIGRSITSNLRASSARSDGSAKGRALSASESPHATSSNASSEPSVNNTFFAEEEENGITS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09000			proline-rich family protein (....		Lus10004824 [exp]	0	1
AT5G01910			unknown protein		Lus10022734 [exp]	8.6	0.8857
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10039354 [exp]	9.5	0.8669
AT4G35930			F-box family protein (.1)		Lus10028422 [exp]	12.3	0.8819
AT3G20390			endoribonuclease L-PSP family ...		Lus10040074 [exp]	12.6	0.8570
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033951 [exp]	22.6	0.8607
AT3G18630		ATUNG	uracil dna glycosylase (.1)		Lus10012898 [exp]	24.4	0.8615
AT4G10630			Glutaredoxin family protein (....		Lus10033238 [exp]	28.1	0.8584
AT5G48480			Lactoylglutathione lyase / gly...		Lus10020400 [exp]	28.4	0.7818
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10011542 [exp]	29.7	0.8095
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	30.9	0.8569

Compare expression of checked genes

Lus10004824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.