Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09010 477 / 9e-169 Protein kinase superfamily protein (.1) AT1G16670 325 / 7e-109 Protein kinase superfamily protein (.1) AT1G56145 322 / 5e-101 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56120 320 / 4e-100 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 318 / 1e-99 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 315 / 2e-98 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 311 / 3e-97 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 309 / 3e-96 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 305 / 7e-95 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 300 / 4e-93 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002494 [exp] 607 / 0 AT3G09010 462 / 3e-162 Protein kinase superfamily protein (.1) Lus10011193 [exp] 392 / 2e-135 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10018481 [exp] 391 / 6e-134 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1) Lus10001212 [exp] 356 / 8e-118 AT3G09010 384 / 2e-128 Protein kinase superfamily protein (.1) Lus10028149 [exp] 345 / 1e-116 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042851 [exp] 345 / 2e-116 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10042460 [exp] 338 / 4e-114 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 333 / 4e-112 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10019933 [exp] 308 / 8e-103 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114800 [exp] 514 / 0 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 421 / 5e-147 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 416 / 8e-145 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 333 / 7e-112 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 330 / 8e-111 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 328 / 4e-110 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.001G082900 [exp] 337 / 1e-106 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G393200 [exp] 319 / 9e-106 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 307 / 3e-102 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.003G148000 [exp] 321 / 9e-101 AT1G56145 1063 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10004825 pacid=23158620 polypeptide=Lus10004825 locus=Lus10004825.g ID=Lus10004825.BGIv1.0 annot-version=v1.0 ATGAGCTGTAGCTGCTCTGGCCTGTTCAGCGGCTTTACTGGGAACAAGAAGGACCGTGGACAACACTTGGCACCAACAGAAGAGATTGCCACAAACAACT TGAGGCTGTTCTCTTACAATTCGTTGAGATCAGCCACCTTGAACTTTCACCCAGCTAACAAGATTGGTGGGGGTGGCTTCGGAGTTGTCCACAAGGGAAC CTTGAGAGATGGTAGCCAAGTGGCCATAAAGTCACTCTCTGCAGAATCTAAACAAGGAACTGAGGAGTTCAAAGCTGAAATCAAGATGATCTCCAACGTT CGCCACCCAAACCTTGTCCAACTTGTTGGCTGCTGTATCGAGGCCAACCATCGAATATTGGTATATGAATATCTAGAGAACAACAGCCTTGCTACTGCTT TACTTGGTTCGAAAGGGAAACACATTACTATGGATTGGGCAGCAAGAGCTGCAATCTGCCTTGGCACCGCAAATGGGATAGCATTTCTCCACGAGGAAGC CGACCCATCTATTGTCCACAGGGATATTAAGGCCAGTAACATACTTCTAGCTGCCAATTTACAGCCCAAGATCGGAGATTTTGGGCTGGCGAAACTCTTC CCGGACAATGTCACTCATGTCAGCACTCGAGTTGCAGGAACATTGGGATATCTGGCCCCGGAATATGCCCAACTAGGACAGCTCACCAAGAAGGCTGATG TGTACAGCTATGGAGTCCTTGTGCTTGAGATAATTAGTGGCAGAAGTAGCAGCAAGGCTGCCTTTGGAGAGGAACTACTGCTTCTGGTTGAATGGGCATG GAAACTGCAGAGTGAAGAAAGACTACTAGAACTGGTTGATCCAGAACTTGCCGACTATCCAGACCATGAAGTACTCAGATTCACTAAAGTTGCTCTCTTT TGCACTCAATTAGCTGCCAGCCAAAGACCCACGATGCTCCAAGTGGTGGAAATGCTGTCCAGAAACGTACACCTGAACGACAAGGCACTAACAGAGCCAG GGGTTTGCAGAACCCGCAGCACTACGTCTAGACGCTCCGGTGGCAGTGGCGGAGGAAACGATTCGTCATCCTCGGGGAAAGATCTTAAACGTAAACAGAC AGTATTAAATCCTTCAATAGGCTCCGACGTAGTTAGTAGTTCTCCTAGCATCACACAGATGTTCCCCAGATGA
AA sequence Show only first row Show all	>Lus10004825 pacid=23158620 polypeptide=Lus10004825 locus=Lus10004825.g ID=Lus10004825.BGIv1.0 annot-version=v1.0 MSCSCSGLFSGFTGNKKDRGQHLAPTEEIATNNLRLFSYNSLRSATLNFHPANKIGGGGFGVVHKGTLRDGSQVAIKSLSAESKQGTEEFKAEIKMISNV RHPNLVQLVGCCIEANHRILVYEYLENNSLATALLGSKGKHITMDWAARAAICLGTANGIAFLHEEADPSIVHRDIKASNILLAANLQPKIGDFGLAKLF PDNVTHVSTRVAGTLGYLAPEYAQLGQLTKKADVYSYGVLVLEIISGRSSSKAAFGEELLLLVEWAWKLQSEERLLELVDPELADYPDHEVLRFTKVALF CTQLAASQRPTMLQVVEMLSRNVHLNDKALTEPGVCRTRSTTSRRSGGSGGGNDSSSSGKDLKRKQTVLNPSIGSDVVSSSPSITQMFPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09010			Protein kinase superfamily pro...		Lus10004825 [exp]	0	1
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Lus10017706 [exp]	12.2	0.7019
AT5G07620			Protein kinase superfamily pro...		Lus10042988 [exp]	14.3	0.7336
AT2G43430		GLY1, GLX2-1	GLYOXALASE II, glyoxalase 2-1 ...		Lus10033662 [exp]	22.5	0.6762
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10035694 [exp]	26.3	0.7435
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10020281 [exp]	27.1	0.7312
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10005705 [exp]	28.6	0.7348
AT1G78530			Protein kinase superfamily pro...		Lus10005569 [exp]	32.6	0.7294
AT5G47800			Phototropic-responsive NPH3 fa...		Lus10039099 [exp]	47.9	0.7252
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10000067 [exp]	55.4	0.6756
AT5G24430			Calcium-dependent protein kina...		Lus10023234 [exp]	59.5	0.6038

Compare expression of checked genes

Lus10004825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.