Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01260 160 / 1e-44 Carbohydrate-binding-like fold (.1.2) AT5G26570 56 / 5e-08 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002495 [exp] 808 / 0 AT5G01260 152 / 3e-42 Carbohydrate-binding-like fold (.1.2) Lus10035528 [exp] 210 / 1e-58 AT2G40070 280 / 4e-83 unknown protein Lus10027767 [exp] 202 / 6e-56 AT2G40070 288 / 5e-86 unknown protein Lus10018226 [exp] 135 / 2e-34 AT5G01260 124 / 3e-32 Carbohydrate-binding-like fold (.1.2) Lus10041275 [exp] 54 / 2e-07 AT5G26570 1353 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10037434 [exp] 50 / 4e-06 AT5G26570 1508 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114500 [exp] 192 / 7e-55 AT5G01260 169 / 1e-48 Carbohydrate-binding-like fold (.1.2) Potri.006G099200 [exp] 186 / 2e-52 AT5G01260 156 / 8e-44 Carbohydrate-binding-like fold (.1.2) Potri.009G044800 [exp] 152 / 4e-41 AT5G01260 149 / 8e-42 Carbohydrate-binding-like fold (.1.2) Potri.014G147900 [exp] 49 / 1e-05 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.002G234500 [exp] 48 / 2e-05 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G170300 [exp] 47 / 3e-05 AT2G04270 1009 / 0.0 RNAse E/G-like (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF00686 [flax] [poplar] CBM_20 Starch binding domain
Representative CDS sequence Show only first row Show all	>Lus10004826 pacid=23158599 polypeptide=Lus10004826 locus=Lus10004826.g ID=Lus10004826.BGIv1.0 annot-version=v1.0 ATGGAATCCCTTGGGAGCGTTTCTGCGTCTCCGTCCTCTAACGCCGTCGTTTTACGCGGAAATGGAAGCAGAGGCTTGCTTCCTTTCACTCAATCTAACC ATCGTAGAATCTGTATCAGCCTTCTTCCTGCTTCAACGAAGCCTGGAAATGGAAATTCGCTGCATTCCGCTAGCTTCAAGAAGCAGTGGAGTAGAACTTT TTCTCCAATTTCAGCTTCTGCTTCTCTCTCGCAGGACTCTGTCCAGGTCAGCGGCCAACCCAATCTCTCAGCTGTGGACTTAGAAGAAACGAGTAGTAGC ACTACTGTACGGGTGCGCTTCCTTCTACAGAAGGAATGCTCTTTTGGGGAGCAATTTTTGTTGGTTGGCGACGATCCTGTGCTGGGTTTATGGGATCCTG AAATTGGAGTACCATTGGAATGGTCAGATGGCCATGTTTGGGCTGCAGAATTAGATATACCAATTGGTAGAACAATCAAGTACAAGTTCATCCTCAAAGG AACTGATGGCAAGATGCTGTGGCAACCGGACCCTGATCGAGTTCTCGAGACATGGGAAGCTTCAAAGATCATTGTTGTTTTTGAAGATTGGCAAGATCCT CACTTTAATAAGATTGTGGAGGAAGAAGAAGAAGAACATGCCACTCAGAGTCTTGTAAAGGAAGATCAAGTGGTTGCTGAGGATTTCACGCCTGCTACTG ATTCAAATTTGCAGATTGCTACAGAGAATTCGGCTCCCGTTGAAGATCCTAGTTTGCAGATTGTAGCAGAGAATTTGGCTCCTAAAGAGAGAAGAAGAGT TATTAATGGTGCAATGGAAGAACAACGCACTGAGAGTGTTGTGAAGGAAGAAGAGTCAGTGGCCAATGAAGACTCTGCCAACTCTAGTTTGCACATTATT GTGGAGCCAAAATTGGCTCCTGATCAAGACACTGAATCCGTTTCTATCTCAGTGGATCCACCATTTCGAGCAGACCATGAGACAGACATTGGTGCTGCTA CCTCACTAGAGAATCCCAGTCCTGTTATTGCAGATGATATCAGTCACCATCATCAAGAGGAGAGTTCCACAAGCCATCAACTTTTAGGTGAAAATACTAC AAGTCACTTAAAGGAGAAGCCTTTGTCACCTCCAAGTAACAACGTTGGCAATCTTAATGACAGTGACAGTGTCTCATCAGCCATTGATAGAAACTCGGTA CCTGGTGAAAGTGTGCCTGTACTCGTACCGGACTTATCTCCAGTTCCCGAGAACATAACCGACGCACATGCTACCAGTGAAGGCGAAAGCTGTGGAAGTG TTGCCTTTGATGCTTCTGTTGAAGGAGCTAATAACAACACGAGTCCCAGTTCACAAGAGAATGGCAGTGTGATCCAGTACAATAAGGCAGCAACATTAGA GCTATACAAGGAGGAAGGAACTGGACAACTGATGTCTGCTGGTTCAGCAAGTGAAGGACACTCAAGACCTCGCAGTGGGAAAGATTGTGCATTGCAAAGC GATGTACAATGGGTTCAGAAACTGCTTAGTAACCTAGGATTGCTTACGATCATCATCACCTTCCAAAATGGACTTGATCTTCTTACTTGCCTAATGAATC CGGCAGCAGATTTCCAGTTGCCACCATCCGATGCGTCCTTGATTTCTGTACACCTTGAGATGTGCATAGCGTAA
AA sequence Show only first row Show all	>Lus10004826 pacid=23158599 polypeptide=Lus10004826 locus=Lus10004826.g ID=Lus10004826.BGIv1.0 annot-version=v1.0 MESLGSVSASPSSNAVVLRGNGSRGLLPFTQSNHRRICISLLPASTKPGNGNSLHSASFKKQWSRTFSPISASASLSQDSVQVSGQPNLSAVDLEETSSS TTVRVRFLLQKECSFGEQFLLVGDDPVLGLWDPEIGVPLEWSDGHVWAAELDIPIGRTIKYKFILKGTDGKMLWQPDPDRVLETWEASKIIVVFEDWQDP HFNKIVEEEEEEHATQSLVKEDQVVAEDFTPATDSNLQIATENSAPVEDPSLQIVAENLAPKERRRVINGAMEEQRTESVVKEEESVANEDSANSSLHII VEPKLAPDQDTESVSISVDPPFRADHETDIGAATSLENPSPVIADDISHHHQEESSTSHQLLGENTTSHLKEKPLSPPSNNVGNLNDSDSVSSAIDRNSV PGESVPVLVPDLSPVPENITDAHATSEGESCGSVAFDASVEGANNNTSPSSQENGSVIQYNKAATLELYKEEGTGQLMSAGSASEGHSRPRSGKDCALQS DVQWVQKLLSNLGLLTIIITFQNGLDLLTCLMNPAADFQLPPSDASLISVHLEMCIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	0	1
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	1.0	0.9330
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	3.5	0.9071
AT1G73350			unknown protein		Lus10031897 [exp]	4.0	0.9088
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	4.5	0.8994
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	5.3	0.9009
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	6.0	0.8948
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	6.3	0.8844
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Lus10029712 [exp]	6.9	0.8857
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10021279 [exp]	7.5	0.8634
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10035942 [exp]	8.5	0.8809

Compare expression of checked genes

Lus10004826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.