Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 711 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 699 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 694 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 664 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 651 / 0 EFR EF-TU receptor (.1) AT2G24130 399 / 2e-121 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 377 / 4e-112 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 363 / 5e-108 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 360 / 5e-107 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 359 / 1e-106 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011386 [exp] 746 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 745 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 738 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 734 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 730 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 730 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 729 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 727 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 727 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G044500 [exp] 770 / 0 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 768 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 765 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 763 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 759 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G037400 [exp] 758 / 0 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 756 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 754 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 751 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 750 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004827 pacid=23158624 polypeptide=Lus10004827 locus=Lus10004827.g ID=Lus10004827.BGIv1.0 annot-version=v1.0 ATGGTGATTTCAGAAATAGAAGAGGAGGGTGCACAAGAAGATGTAATATTTTGCATCAACAAAGAAGCTCAGAAGGAGAAGATCAGAAGAATAATAGCTC ACCAGAAGTCACTCCACTTCTCATCATCATCATCATCAAATTGCTCTACTTCAGGGTCACAGGGAAGCAGCAATCTATTGGAGTTGATGAAAAGAGGGAG TACAACTCTTGGAAGGCTGTTTGGGATGGAGCACACAACTCTAGCTTCCCATTTCAGTGACTACAGCTGCTCCCCAACTACCAAGACCATTCCTCTGTGG GAAAGCGATGGAGAGGATCTGATTATCCGTCCGGATCCTTGGGAATCAATCAGGGAGTTTGGGAGGAAAGGTAACGATGACCATGATGATCCAATTATGG ATCCATTCATCCCCAGAGAATACGCTCTTCTTTCATTCCTTTCCCTCATACTCTGCAGCTCCAGCTTATCAGCTGCACCAGTTCCTGGAAACGAATCCGA CCGAAACGCTTTACTCGACTTCAAGACACTCATCACTGAGGACCCATCTCAAATCTTAAGCTCATGGAACGATTCAACCCATTTCTGCAACTGGATCGGG GTCTCCTGCAACCCATCCAATGGGAGAGTCCAGGCTTTAAATCTACAGTCTCAGAAGTTGAGCGGTTCCTTACCACCTTCCCTAGGAAACCTCACTTTTC TGACCGCTATCAACCTCAGAACCAACAGCTTTTCCGGCCGACTTCCGGTGGAACTCAGCCACCTCCAGCTCTTGCGCCACCTCAACTTGACCTTCAACTC CTTCACCGGAAATATCCCCTCCAATCTCAGCAAGGACCTCACTTTTCTGTCCCTCGCCGGAAATGATTTCTCCGGCAAGATTCCGGACCAACTCCGTTGG AATTCCAAGCTGGTTTTGTTCGATGTTGGGTTCAACAATCTTACAGGAATTGTACCGAGGTGGATCGGGAATTTGTCTTCGCTTGTTGCATTATCAGTTG GTCCAAACAATTTCAGAGGAACTATTCCTGATGAGTTCGGCCACCTTTCTCGACTTGGATTCTTCCAACTTTTCGGCAATTATCTGACCGGTACGATTCC CTCTGCTATTTACAACATCTCGTCGCTTTACTTCTTTGCAGTTGCGCAGAACCACTTGCATGGCCAGCTTCCTCCAGATGTTGGCCTCAAGCTGCCAAAC CTTAGAACATTTTCAGGTGGTGTCAATAACTTCACAGGCAAGATTCCCGTCTCGTTAGCCAATGCCACTGGTCTTCAGATTCTCGATTTCGCCCAGAATA GTCTTACCGGTGAAGTTCCTGAAAATCTTGCAACTTTACAAGGTTTATCCAGGCTTAATTTTGATCAAAATTTTCTTGGATATAGGAGAAGTAATGGACT TGATTTCCTTACTTCACTTGTTAACTGCACAAGTCTGGCTGTATTAGGAATGGGTTACAACAATTTTGGTGGATCATTGCCTGACTCCATAGCCAACCTG TCAAGCCAATTAAAGATTTTGACTCTGGGTGGGAATCAGTTAATGGGAAGAATTCCTGGTAGGATAGGGAATTTGATGAGCCTTTCAACTTTGGGATTGG AAGGAAATTTATTGACTGGGAATATTCCTGACAGTATTGGCAGGCTCCAGCAATTGGAAGGTTTGCATCTAAATGTCAACAGGTTAACTGGGAAAATCCC TTCCTCTATTGGTAATTTGACTAGATTGACAAGGCTATTCATGGAGGAAAACGGACTGGAAGGGAGCATTCCTCCGAGTTTAGGAAACTGCCAGAGCCTC CAGAATTTGAACATGTCTTCCAACAACCTCAATGGAACCATACCCAGACAAGTTATTGGCCTTTTCTCTCTCTCAATTTCTTTGGTACTGTCTAGCAATC ACTTGACAGGTTCCATACCATTACAAGTTGGTAACTTGAACAACCTCATGAACTTGGATCTGTCAGGAAATGAGCTCTCAGGTGAAATTCCAGGAACTAT TGGCAGTTGTATAAGCTTGGAATACTTGAGCTTACAGGGTAATCACTTGCAAGGCAGAATTCCAGTGTCTCTCAGAGCTTTGAGAGGTGTAAGGAGCTTG GATCTTTCAAGCAACAACTTGTCAGGAAGGATTCCTGAATTCCTCACTACATTCACTTCCCTCAACCATCTTAACCTCTCTCATAACAACTTCACTGGGG AAGTTCCGATCAAAGGCGTGTTTGCAAACTCCACTGCTTTCTCCATAGCTGGAAACCCCAGAATCTGCGGCGGAGTGGAAGGATTATATTTGCCTTTATG CATACAGGAAGAGCAGTACAGATCCAGTACTAAATCACTTAACCTGAAGATAGTTATTCCAGCAATAGTAATAACACTATTAGCTGCTATTCTAGCCGGT TATCTGGCCATGTTGCTTTTCAAAAGGAAATCCTCAGAGGCACGAGGCAGCCAAGTTAGTCTTGCTGTAGATCAGGACTATCAAATGGGTGTTTCTTACT TGGAACTCCAGAGATCCACAAATGGGTTTGCAGCTGACAACTTAATCGGTTCTGGAAGCTTTGGTTCTGTATACAAGGGAGTTTTAGTTTTACCTGATGT GGAAAAAACGGTTGCTATTAAGGTTCTGAACCTTCAACAACATGGAGCTTCAAGGAGCTTCATTGATGAATGTAATGCTTTGAAAAATGTCAGGCACAGG AATCTGGTCAAGATCTTGAACATATGCTCAACCTTTGACCCTCGAGGGAATGACTTCAAAGCTATTGTCTTTGAGTTCATGTCCAATGGAAGCCTGGAAG ATTGGCTGCATCCTCATAACATTAATGTTACTAGATTGAGCCTTACCCAGAGGCTCAACATAGCCATTGATGTTGCCAATGCACTGGATTACCTCCACCA CCATTGTGAGACTCCCATTGCTCACTGTGATCTCAAACCCAGCAATACACTGCTCGATGAAGACTTGACAGCACACGTTGGTGACTTCGGATTGGCGAGT TTCCTCTTCGAATCATCGAATGCCCAACCGGTATCAGTGAGCTTGAAGGGCTCAATCGGCTACATTCCTCCAGAGTATGGACATGGAGGCCGGGTTTCGG TGGTGGGAGATGTTTACAGCTTTGGAGTACTGCTCCTGGAAATGTTCACAGGGAAAAGACCTACCGAGGAGATGTTCAAAGATGACATGAGCCTCCACAA GTACGTGGAAATGGCGTTGCCTGATCATGTCCTGGATGTTGCTGACAAGTCGATGCTACTCGAGGAGGCTGAGGAATTCGCTTGCCCTGATGATGGCAAA CAAGGGAGGGAAGATGAAGAGGCAATTATGAAAGATCATCCAGGTCATTCAATGAATGAAAAGGTTGAAGAATGCTTGGCCGGAGTTATGAAAGTTGGAC TCGCATGTTCAGCTGCATCTCCAGTGAATCGAATGAGTATGAGCCTTGCTGTAAATATACTGCTAGACGTTAGAACTGTGTTCCAACGTTAA
AA sequence Show only first row Show all	>Lus10004827 pacid=23158624 polypeptide=Lus10004827 locus=Lus10004827.g ID=Lus10004827.BGIv1.0 annot-version=v1.0 MVISEIEEEGAQEDVIFCINKEAQKEKIRRIIAHQKSLHFSSSSSSNCSTSGSQGSSNLLELMKRGSTTLGRLFGMEHTTLASHFSDYSCSPTTKTIPLW ESDGEDLIIRPDPWESIREFGRKGNDDHDDPIMDPFIPREYALLSFLSLILCSSSLSAAPVPGNESDRNALLDFKTLITEDPSQILSSWNDSTHFCNWIG VSCNPSNGRVQALNLQSQKLSGSLPPSLGNLTFLTAINLRTNSFSGRLPVELSHLQLLRHLNLTFNSFTGNIPSNLSKDLTFLSLAGNDFSGKIPDQLRW NSKLVLFDVGFNNLTGIVPRWIGNLSSLVALSVGPNNFRGTIPDEFGHLSRLGFFQLFGNYLTGTIPSAIYNISSLYFFAVAQNHLHGQLPPDVGLKLPN LRTFSGGVNNFTGKIPVSLANATGLQILDFAQNSLTGEVPENLATLQGLSRLNFDQNFLGYRRSNGLDFLTSLVNCTSLAVLGMGYNNFGGSLPDSIANL SSQLKILTLGGNQLMGRIPGRIGNLMSLSTLGLEGNLLTGNIPDSIGRLQQLEGLHLNVNRLTGKIPSSIGNLTRLTRLFMEENGLEGSIPPSLGNCQSL QNLNMSSNNLNGTIPRQVIGLFSLSISLVLSSNHLTGSIPLQVGNLNNLMNLDLSGNELSGEIPGTIGSCISLEYLSLQGNHLQGRIPVSLRALRGVRSL DLSSNNLSGRIPEFLTTFTSLNHLNLSHNNFTGEVPIKGVFANSTAFSIAGNPRICGGVEGLYLPLCIQEEQYRSSTKSLNLKIVIPAIVITLLAAILAG YLAMLLFKRKSSEARGSQVSLAVDQDYQMGVSYLELQRSTNGFAADNLIGSGSFGSVYKGVLVLPDVEKTVAIKVLNLQQHGASRSFIDECNALKNVRHR NLVKILNICSTFDPRGNDFKAIVFEFMSNGSLEDWLHPHNINVTRLSLTQRLNIAIDVANALDYLHHHCETPIAHCDLKPSNTLLDEDLTAHVGDFGLAS FLFESSNAQPVSVSLKGSIGYIPPEYGHGGRVSVVGDVYSFGVLLLEMFTGKRPTEEMFKDDMSLHKYVEMALPDHVLDVADKSMLLEEAEEFACPDDGK QGREDEEAIMKDHPGHSMNEKVEECLAGVMKVGLACSAASPVNRMSMSLAVNILLDVRTVFQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10004827 [exp]	0	1
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	2.0	0.8855
AT1G33970			P-loop containing nucleoside t...		Lus10009482 [exp]	2.0	0.8846
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	6.0	0.8704
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	8.7	0.8631
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10037081 [exp]	10.5	0.8427
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	10.8	0.8661
AT3G05350			Metallopeptidase M24 family pr...		Lus10004479 [exp]	11.4	0.8413
AT2G17695			unknown protein		Lus10028386 [exp]	13.9	0.8585
AT5G57910			unknown protein		Lus10022161 [exp]	14.1	0.8263
AT5G24314		PDE225, PTAC7	PIGMENT DEFECTIVE 225, plastid...		Lus10041454 [exp]	14.2	0.8494

Compare expression of checked genes

Lus10004827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.