Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38150 413 / 8e-143 alpha 1,4-glycosyltransferase family protein (.1) AT5G01250 362 / 1e-122 alpha 1,4-glycosyltransferase family protein (.1) AT3G09020 343 / 3e-115 alpha 1,4-glycosyltransferase family protein (.1) AT2G38152 312 / 2e-103 alpha 1,4-glycosyltransferase family protein (.1) AT1G61050 280 / 5e-90 alpha 1,4-glycosyltransferase family protein (.1) AT4G19900 128 / 5e-32 alpha 1,4-glycosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002496 [exp] 755 / 0 AT2G38150 388 / 4e-133 alpha 1,4-glycosyltransferase family protein (.1) Lus10027772 [exp] 559 / 0 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10035525 [exp] 556 / 0 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10027771 [exp] 429 / 2e-138 AT2G38150 317 / 8e-97 alpha 1,4-glycosyltransferase family protein (.1) Lus10027770 [exp] 342 / 1e-114 AT5G01250 366 / 2e-124 alpha 1,4-glycosyltransferase family protein (.1) Lus10035526 [exp] 342 / 1e-114 AT5G01250 362 / 6e-123 alpha 1,4-glycosyltransferase family protein (.1) Lus10011206 [exp] 286 / 6e-92 AT1G61050 345 / 5e-115 alpha 1,4-glycosyltransferase family protein (.1) Lus10017137 [exp] 134 / 9e-34 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10018315 [exp] 130 / 1e-32 AT4G19900 699 / 0.0 alpha 1,4-glycosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114200 [exp] 412 / 4e-142 AT3G09020 419 / 3e-145 alpha 1,4-glycosyltransferase family protein (.1) Potri.011G047700 [exp] 318 / 4e-105 AT1G61050 389 / 1e-132 alpha 1,4-glycosyltransferase family protein (.1) Potri.004G039300 [exp] 305 / 6e-100 AT1G61050 393 / 4e-134 alpha 1,4-glycosyltransferase family protein (.1) Potri.006G098900 [exp] 249 / 4e-81 AT2G38152 258 / 1e-85 alpha 1,4-glycosyltransferase family protein (.1) Potri.015G122200 [exp] 99 / 4e-22 AT4G19900 420 / 7e-138 alpha 1,4-glycosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04488 [flax] [poplar] Gly_transf_sug Glycosyltransferase sugar-binding region containing DXD motif CL0110 [flax] [poplar] PF04572 [flax] [poplar] Gb3_synth Alpha 1,4-glycosyltransferase conserved region
Representative CDS sequence Show only first row Show all	>Lus10004828 pacid=23158616 polypeptide=Lus10004828 locus=Lus10004828.g ID=Lus10004828.BGIv1.0 annot-version=v1.0 ATGGTCCTTCGCCGTCAAATCTCCTTACATTCCAAGCTGCTGAAGGATATGTCTAAGCAGTTGAGCGACTTCCGTACCATCCCTGCTACTACCAAGACGC AGATCTTCTATGCCGTCTCCTTTACTATTATATTCTTATTTGTCTTTGCAGACGTCCTCTTTCCGGGCTCTTTCCAAGTACCAGAGACTCCAGAGTTTCA GTTACCTGCAGTCACCCAGTTGCCACAGCCACAGGTTGCAGCACGAATGAATATAGAGGAGGAACAAGACGATAGTGAAGCTGTAGACCCTTTAGTTCCT CCTGTCAATATCACCAAGGCAGAAAGGATAGAGTGGTTTCGTGAGAAGCTGCCCGAACTCGACTTGCTGAATTCGAACGAATTGAGCGAGAAGTTTCATG GCAGGGTTCTGGAGTTCTTCAACAACAACTGTTCGGTCCAATTCTATATGGTGTGGCTTTCACCAGCCACGACTTTTGGACCGAGGGAATTCCTGGCCAT GGACAGTCTCTTCCATTCAAATCCAGATGCATGTTTGATTATAGTGTCACGGTCTATGGACTCCAAGCATGGATACAGAAAACTTAAGCCTATGCTTGAT CTTGGCTACAAAGTTCTAGCCGTCACACCAGACGTGCCATTCCTAGTACAAGGTACACCGGGTGAAGATTGGCTTGTAGGCATGAAGAGTGGGACGAGGG ATCCTGGCTATATTCCTCTAACTATAAACCTTTCTAATCTGATAAGGATTTCCATGATATATAGGTATGGAGGGACATACCTGGATACAGACTTCATCGT TCTGAAAGACTTTTCAGGCCTAAGGAATGCAGTCGGGGCACAAAGTATCGATCCTACAACGAACAGATGGACCTGCATCAACAATGCAGTTGTGGTCTTC GATCTGGGCCATCCTATTATGTTGGAATTCATTGAGGAATTCTCAAACACCTTCAACGGAAACAAATGGGGATACAATGGACCTGCTATGTTTTCCAGGG TATTCGAGAGGGTGGGTAGCAAGCGTGAGTATAATTTGACCATCATGCCACCAAATGCATTTTATCCAGTCGACTGGATTCAGATACGGAGGCTTTTCAA AAAGCCAACGACTGGCTATCAGTCAAGATGGGCAGACCAGCTTCTGTTAGATCTGCAAAATAGTTATGCACTGCACCTATGGAACAAGAGGAGTAGAGAG TTGATTATTGAAGAAGGTAGTGTGATGGACAGACTAATCTCAGATCACTGCGTTGTCTGTCAACATATCAACCATGCTTGA
AA sequence Show only first row Show all	>Lus10004828 pacid=23158616 polypeptide=Lus10004828 locus=Lus10004828.g ID=Lus10004828.BGIv1.0 annot-version=v1.0 MVLRRQISLHSKLLKDMSKQLSDFRTIPATTKTQIFYAVSFTIIFLFVFADVLFPGSFQVPETPEFQLPAVTQLPQPQVAARMNIEEEQDDSEAVDPLVP PVNITKAERIEWFREKLPELDLLNSNELSEKFHGRVLEFFNNNCSVQFYMVWLSPATTFGPREFLAMDSLFHSNPDACLIIVSRSMDSKHGYRKLKPMLD LGYKVLAVTPDVPFLVQGTPGEDWLVGMKSGTRDPGYIPLTINLSNLIRISMIYRYGGTYLDTDFIVLKDFSGLRNAVGAQSIDPTTNRWTCINNAVVVF DLGHPIMLEFIEEFSNTFNGNKWGYNGPAMFSRVFERVGSKREYNLTIMPPNAFYPVDWIQIRRLFKKPTTGYQSRWADQLLLDLQNSYALHLWNKRSRE LIIEEGSVMDRLISDHCVVCQHINHA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10004828 [exp]	0	1
AT1G51405			myosin-related (.1)		Lus10009954 [exp]	2.8	0.8109
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040923 [exp]	3.0	0.8346
AT1G13570			F-box/RNI-like superfamily pro...		Lus10006346 [exp]	4.9	0.8016
AT1G15170			MATE efflux family protein (.1...		Lus10018135 [exp]	5.7	0.8152
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10033044 [exp]	7.2	0.7653
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	8.5	0.8011
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	9.2	0.8057
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	9.9	0.8016
AT4G11900			S-locus lectin protein kinase ...		Lus10041639 [exp]	13.2	0.7204
					Lus10026124 [exp]	15.0	0.7557

Compare expression of checked genes

Lus10004828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.