Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005957 [exp] 424 / 8e-151 AT1G48120 75 / 1e-14 hydrolases;protein serine/threonine phosphatases (.1) Lus10039393 [exp] 363 / 8e-128 AT1G17930 73 / 3e-14 Aminotransferase-like, plant mobile domain family protein (.1) Lus10005495 [exp] 353 / 1e-124 AT1G17930 54 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10018964 [exp] 349 / 1e-123 ND / Lus10025363 [exp] 323 / 2e-113 ND 39 / 0.002 Lus10008249 [exp] 289 / 6e-100 ND 40 / 3e-04 Lus10007688 [exp] 275 / 1e-94 ND / Lus10009744 [exp] 259 / 7e-89 ND / Lus10006899 [exp] 254 / 6e-87 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10004830 pacid=23158596 polypeptide=Lus10004830 locus=Lus10004830.g ID=Lus10004830.BGIv1.0 annot-version=v1.0 ATGGTGGGGTCCGTGTCCCTACTTCAGTCCTGGATTCACGAGTACTTCCCTAGTACTCGTGCAGCTAGAGTAGCGGCTCGACAGCGGGGTGATACCGAGG CGTTGGTTGGGCGGTGGAGCAGTATCGAGCAGCCGGATAGATCATACGACTTCTTGCATCGTCGTCTTGAGTACTACCGTCGTCTGCTGGATGATATGAC CGCAGAGGATGTGATTTGGCTGACATTTGGGACACGCCCCGAGGTGGAGGTTCCCGATTCGACGTTCCGTGGGGTCATTCGTTTCGGTCCGACGGCAGAG TATTATAACCCGACACGTGTCGTTAGACAGTACGGCTACGCGCAGATGATTTCGGGCCTCATCCCGTTGCCTTCTAGGGCTTACAGGGCTGCTGAGCCCA ACGGGTACACAGTTGAGTGGGCTGACCCCAGAGATAGAGCGTGGAGGGACGAGGACTGGTCCAGGCTGATGCCGTTTCAGTCTTTGTTTAGGCGTGCAGA GGATGTGACCGAGGTCGACCCCCGATACATGTACTGGTATCGGCGCCACACCCACCCGCGCATCCTCAGACCCATCCATACTGGTGTAGCGGCCCCGACA GATATGCTAGCTTACAGGGTGTTGGATCATATGCATCCATTCTATACTGGGCAGATGAGACAGGAGTACGAGTCTGATGCCGAGTACCTAGAGGCGGTCG AGCACTTGAGATGCAGTGTTGCTGGGATGTACGTGGACTTCCGACACCAGAGACCGTACCGTTAG
AA sequence Show only first row Show all	>Lus10004830 pacid=23158596 polypeptide=Lus10004830 locus=Lus10004830.g ID=Lus10004830.BGIv1.0 annot-version=v1.0 MVGSVSLLQSWIHEYFPSTRAARVAARQRGDTEALVGRWSSIEQPDRSYDFLHRRLEYYRRLLDDMTAEDVIWLTFGTRPEVEVPDSTFRGVIRFGPTAE YYNPTRVVRQYGYAQMISGLIPLPSRAYRAAEPNGYTVEWADPRDRAWRDEDWSRLMPFQSLFRRAEDVTEVDPRYMYWYRRHTHPRILRPIHTGVAAPT DMLAYRVLDHMHPFYTGQMRQEYESDAEYLEAVEHLRCSVAGMYVDFRHQRPYR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17930			Aminotransferase-like, plant m...		Lus10004830 [exp]	0	1
AT5G15110			Pectate lyase family protein (...		Lus10033018 [exp]	1.0	0.9102
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Lus10022314 [exp]	5.2	0.7052
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005360 [exp]	6.8	0.7834
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10027046 [exp]	7.1	0.7531
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10025536 [exp]	7.5	0.7032
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10033233 [exp]	7.5	0.8208
AT3G05950			RmlC-like cupins superfamily p...		Lus10041900 [exp]	8.5	0.7769
					Lus10025316 [exp]	9.2	0.8208
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10030510 [exp]	10.6	0.8208
AT5G39200			unknown protein		Lus10030710 [exp]	11.8	0.8208

Compare expression of checked genes

Lus10004830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.