Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01220 619 / 0 SQD2 sulfoquinovosyldiacylglycerol 2 (.1) AT3G45100 53 / 3e-07 SETH2 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G73160 49 / 1e-05 UDP-Glycosyltransferase superfamily protein (.1) AT1G73370 48 / 2e-05 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT1G52420 46 / 6e-05 UDP-Glycosyltransferase superfamily protein (.1) AT3G01180 46 / 0.0001 ATSS2 starch synthase 2 (.1) AT4G18240 44 / 0.0003 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT3G43190 44 / 0.0005 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT3G15940 44 / 0.0005 UDP-Glycosyltransferase superfamily protein (.1.2) AT5G24300 43 / 0.0005 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002499 [exp] 761 / 0 AT5G01220 721 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10024892 [exp] 55 / 2e-07 AT3G45100 731 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022925 [exp] 50 / 2e-06 AT3G45100 536 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011469 [exp] 51 / 3e-06 AT1G52420 765 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10018116 [exp] 50 / 8e-06 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10022398 [exp] 49 / 1e-05 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10015371 [exp] 46 / 0.0001 AT3G01180 928 / 0.0 starch synthase 2 (.1) Lus10037523 [exp] 45 / 0.0002 AT1G52420 770 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10033014 [exp] 45 / 0.0002 AT3G01180 973 / 0.0 starch synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G097600 [exp] 672 / 0 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.016G112600 [exp] 642 / 0 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.016G130000 [exp] 56 / 5e-08 AT3G45100 749 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G179000 [exp] 54 / 3e-07 AT3G15940 794 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.015G029100 [exp] 53 / 7e-07 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 52 / 1e-06 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.004G081300 [exp] 44 / 0.0003 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 44 / 0.0003 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.011G097000 [exp] 43 / 0.0005 AT1G73160 657 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G351800 [exp] 43 / 0.001 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10004832 pacid=23158613 polypeptide=Lus10004832 locus=Lus10004832.g ID=Lus10004832.BGIv1.0 annot-version=v1.0 ATGACTATCACTGAGTATATCAAAGTCGAAGAAGAAGAGGAAGAGGGTCCTCCCCTTATGCTTGATTCTGAGGCCAATTCCAGGCCTCGTCGCATTGCCC TCTTTGTAGAGCCTTCTCCTTTTGCGTACGTATCCGGATACAAAAACCGTTTCCAAAATTTTATCAAATACTTGCGCGAAATGGGGGACGAGGTGATGGT TGTGACGACACACGAAGGAGTTCCCCAAGAGTTCTATGGAGCGAAATTGATTGGTTCACGGAGCTTTCCTTGTCCCTGGTATCAGAAAGTACCCTTGTCC CTAGCACTTAGTCCTAGAATCATATCCGAAGTTGCCAGATTCAAGCCGGATATAATACACGCATCTTCCCCAGGAATAATGGTTTTTGGCGCTCTTGCTA TTGCAAAAATGTTGTGTGTTCCCATAGTGATGTCTTATCATACTCATGTCCCTGTATACATCCCAAGATACACTTTTAGTTGGCTGGTGACACCTATGTG GATGGTCATAAGTATGTCAGCTTATCATCTTTTTTTCCTCTTTGTTGAATCTTACAGCTGGATGCTTTATGTTTCTGAGCCAACGATTGAAGTAGTTGTT GTCTTTGTTACCAGAGGTGTTAGTTCCGTCATCTGCCGTTGGGAGGGATCTCCTGGAAGCTCAAGTGTCAACAGAGCTGACGAAGGAGAAGGAAGTAGCA GTCAGGATATGACTATCACTGAGTATATCAAAGTGGAAGAAGAAGAAGAAGATGAGGAAGAGAGTCCTCCCCTTATGCTTGATTCTGAAGCCAATTCCAA GCCTCGTCGCATTGCCCTCTTTGTCGAGCCTTCTCCTTTTGCGTATGTATCCGGATACAAAAACCGTTTCCAAAATTTTATCAAATACTTGCGCGAAATG GGGGACGAGGTGATGGTTGTGACGACACACGAAGGAGTTCCCCAAGAGTTCTATGGAGCGAAATTGATTGGTTCACGGAGCTTTCCTTGTCCCTGGTATC AGAAAGTACCCTTGTCCCTAGCACTTAGTCCTAGAATCATATCCGAAGTTGCCAGATTCAAGCCGGATATAATACACGCATCTTCCCCAGGAATAATGGT TTTTGGCGCTCTTGCTATTGCAAAAATGTTGTGTGTTCCCATAGTGATGTCTTATCATACTCATGTCCCTGTATACATCCCAAGATACACTTTTAGTTGG CTGGTGACACCTATGTGGATGGTCATAAAGTTCCTTCACAGGGCTGCTGACCTTACCAATGGAGAACCCAAGAAACCATTGATAGTCCATGTTGGCCGAC TGGGAGTTGAGAAGAGCTTGGAATGCTTGAAAACAGTGATGGATAGGCTTCCAAATGCTAGGATTGCTTTTGTTGGAGATGGCCCATACAGAGAGGAGCT GGAGAAGTTGTTTGAAGGGATGCCTGCTGTATTCACTGGAATGTTGGGAGGAGAGGAACTTTCTGAAGCTTATGCAAGTGGAGATGTCTTCGTCATGCCT TCTGAATCAGAGACCTTGGGGCTTGTGGTTCTGGAAGCAATGTCTTCTGGAATTCCAGTAGTTGGAGTTCGAGCTGGAGGCATTCCAGATATAATCCCAC CAGAACAGGATGGTAAAATTGGGTTCCTATACAGCCCCGGGGATCTTGATGAATGCGTGAACAAGTTGGAAACTTTGATCAATGACCATGAGCTGAGGGA AACCATGGGGATAGCTGCAAGGTTAGAAATGGAGAAATATGATTGGAAGGCAGCCACTAAGGTAATCCGCAACGAGCAATACAATGCAGCCATTTGGTTC TGGCGCAAGAAAAGAGCACAGCTCCTCAGACCTCTGCAATGGCTGGTAAAGAGGATCTTCCCATCTCCAGAAATTACATATCGGTAG
AA sequence Show only first row Show all	>Lus10004832 pacid=23158613 polypeptide=Lus10004832 locus=Lus10004832.g ID=Lus10004832.BGIv1.0 annot-version=v1.0 MTITEYIKVEEEEEEGPPLMLDSEANSRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLS LALSPRIISEVARFKPDIIHASSPGIMVFGALAIAKMLCVPIVMSYHTHVPVYIPRYTFSWLVTPMWMVISMSAYHLFFLFVESYSWMLYVSEPTIEVVV VFVTRGVSSVICRWEGSPGSSSVNRADEGEGSSSQDMTITEYIKVEEEEEDEEESPPLMLDSEANSKPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREM GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALAIAKMLCVPIVMSYHTHVPVYIPRYTFSW LVTPMWMVIKFLHRAADLTNGEPKKPLIVHVGRLGVEKSLECLKTVMDRLPNARIAFVGDGPYREELEKLFEGMPAVFTGMLGGEELSEAYASGDVFVMP SESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPPEQDGKIGFLYSPGDLDECVNKLETLINDHELRETMGIAARLEMEKYDWKAATKVIRNEQYNAAIWF WRKKRAQLLRPLQWLVKRIFPSPEITYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Lus10004832 [exp]	0	1
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Lus10002499 [exp]	1.0	0.8525
AT1G01710			Acyl-CoA thioesterase family p...		Lus10037853 [exp]	3.5	0.8213
AT1G23110			unknown protein		Lus10013464 [exp]	4.9	0.7976
AT1G23110			unknown protein		Lus10007928 [exp]	12.3	0.7708
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10041396 [exp]	13.0	0.7800
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10020513 [exp]	13.4	0.7678
AT1G55535			unknown protein		Lus10021858 [exp]	15.8	0.7786
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10033446 [exp]	18.2	0.7621
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10008048 [exp]	18.7	0.7293
AT3G26935			DHHC-type zinc finger family p...		Lus10032009 [exp]	24.9	0.7334

Compare expression of checked genes

Lus10004832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.