Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38110 511 / 1e-179 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT4G00400 432 / 6e-149 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT1G01610 422 / 7e-145 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT3G11430 350 / 1e-116 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 335 / 5e-111 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT1G06520 332 / 1e-108 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT4G01950 260 / 1e-81 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT1G02390 242 / 1e-74 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT3G11325 235 / 2e-73 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002500 [exp] 725 / 0 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 406 / 3e-138 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10010741 [exp] 405 / 4e-138 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10017794 [exp] 323 / 6e-107 AT3G11430 392 / 5e-133 glycerol-3-phosphate acyltransferase 5 (.1) Lus10018832 [exp] 319 / 2e-105 AT3G11430 390 / 3e-132 glycerol-3-phosphate acyltransferase 5 (.1) Lus10004711 [exp] 318 / 3e-104 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Lus10020767 [exp] 312 / 8e-102 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10010934 [exp] 297 / 3e-95 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 291 / 8e-93 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G113100 [exp] 532 / 0 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 528 / 0 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.014G085500 [exp] 432 / 1e-148 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.016G063900 [exp] 426 / 2e-146 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 420 / 3e-144 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.005G202200 [exp] 342 / 5e-113 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.008G058200 [exp] 338 / 4e-112 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.010G201200 [exp] 337 / 6e-112 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.002G192600 [exp] 295 / 9e-95 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10004833 pacid=23158608 polypeptide=Lus10004833 locus=Lus10004833.g ID=Lus10004833.BGIv1.0 annot-version=v1.0 ATGGGGACTAATTGCTACTTCAGGCCAGTCACAAGATGTAGCAGTGAAAGACGTTCAGATCAGACAGTGGTGGCAGACCTAGACGGCACCCTTCTGCTGT CATCAAGTTCATTCCCTTACTTTTTGCTTGTTGCTCTTGAAGCCGGAAGCCTTTTTAGAGCACTTATACTTGTGTTATCATTACTGAGTCCCAGGATCAT GGTTGAACCCTTTTCCAAAATGTTTCTAGGGGCTGACAAGGTTCTTGGCACAGAGTTACAGATCACAGATTCCGGGAGAGCAACTGGATTCGTTGCGAAA CCTGGACTTATGGTTGGTCAGCAGAAAAGAGATGCGGTCATTAAGGATTTCGGTGCAAATTTTCCAGATGTAGGCATGGGAGATCAAGTTTCTGATTACC CTTTCATGTTCTTATGCAAGGAAAGTTACATAGTACCAAGAACAAAGTGCCAGCCACTACCAAGAAAGAAGCTCAGAAGCCCTTTGATAATCCACGATGG CCGGTTGGTTCAGAGACCTACGCCTTTGGTTGCTCTTTTGACCTTATGGATGCCGTTTGGTTTTATTCTTGCCTCAGTGCGACTATTTCACTGCTTGCCT TTACCGAAGAGTGTCGTCCACTATAGTTGCCAGCTTTCTGGAGTGAAGCTTATAATTAAAGGTACCCATCCACAGCCTGCAGCAAAGGGAAGAAGTGGAG TCGTCTTTGTCTGCAATCACCGTACAGTTGCAGATCCTCCATTGATAGCCATTGCGTTCGGGAGAGAGCTAAGTTGTGTTACATACAGCATAAGCAAGTT CACTGAGATGATAGCGCCAGTGAAAGCAGTTGCTCTGTCGAGAGAAAGGGAGAAAGATGCAGCTCAGATCAAGAAGCTGCTGGAGGAAGGTGAGTTGGTA ATTTGCCCCGAGGGTACCACTTGCAGGGAACCGTCCCTACTGAGATTCAGCCCTCTGTTTGCAGAGCTGACAGAAAGGATCGTGCCAGTTGCGCTTAAGG TGAGGCAGAGCATGTTCAACGGGACAAGTGCGCGGGGATACAAGTGGTTGGATCCATGCTTTCTGTTCATGAACCCGGTACCAACTTACCAGTTCACGTT CTTGGATCAGCTTCCTGAAGAGATGACCTGCAAAGGAGGGAAATCGGCCATTGAAGTTGCAAACTACATCCAGAAGGTACTTGGTGACACTTTGAGATTT GAGTGCACGAAATTGACTAGGAAGGACAAATATGCAATGCTTGCAGGAACAGACGGCTGCGAAGGAGGGGGACTGAGATGTTGA
AA sequence Show only first row Show all	>Lus10004833 pacid=23158608 polypeptide=Lus10004833 locus=Lus10004833.g ID=Lus10004833.BGIv1.0 annot-version=v1.0 MGTNCYFRPVTRCSSERRSDQTVVADLDGTLLLSSSSFPYFLLVALEAGSLFRALILVLSLLSPRIMVEPFSKMFLGADKVLGTELQITDSGRATGFVAK PGLMVGQQKRDAVIKDFGANFPDVGMGDQVSDYPFMFLCKESYIVPRTKCQPLPRKKLRSPLIIHDGRLVQRPTPLVALLTLWMPFGFILASVRLFHCLP LPKSVVHYSCQLSGVKLIIKGTHPQPAAKGRSGVVFVCNHRTVADPPLIAIAFGRELSCVTYSISKFTEMIAPVKAVALSREREKDAAQIKKLLEEGELV ICPEGTTCREPSLLRFSPLFAELTERIVPVALKVRQSMFNGTSARGYKWLDPCFLFMNPVPTYQFTFLDQLPEEMTCKGGKSAIEVANYIQKVLGDTLRF ECTKLTRKDKYAMLAGTDGCEGGGLRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004833 [exp]	0	1
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	2.6	0.7898
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10000782 [exp]	7.5	0.7864
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	10.2	0.7815
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10026189 [exp]	14.0	0.7399
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10036939 [exp]	17.9	0.7440
AT4G27280			Calcium-binding EF-hand family...		Lus10039724 [exp]	18.2	0.7613
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	20.7	0.7601
AT1G27180			disease resistance protein (TI...		Lus10018309 [exp]	21.3	0.7762
AT5G36930			Disease resistance protein (TI...		Lus10042714 [exp]	24.7	0.7133
AT2G17280			Phosphoglycerate mutase family...		Lus10001381 [exp]	25.6	0.7532

Compare expression of checked genes

Lus10004833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.