Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09030 225 / 8e-71 BTB/POZ domain-containing protein (.1) AT5G41330 86 / 1e-18 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT2G24240 45 / 2e-05 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT4G30940 42 / 0.0005 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002501 [exp] 231 / 6e-74 AT2G38110 330 / 2e-109 glycerol-3-phosphate acyltransferase 6 (.1) Lus10038089 [exp] 193 / 2e-61 AT3G09030 144 / 7e-41 BTB/POZ domain-containing protein (.1) Lus10028780 [exp] 92 / 6e-21 AT5G41330 544 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10017502 [exp] 92 / 7e-21 AT5G41330 546 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10032277 [exp] 90 / 4e-20 AT5G41330 574 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10024643 [exp] 87 / 5e-19 AT5G41330 580 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G112900 [exp] 263 / 2e-85 AT3G09030 525 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G129300 [exp] 87 / 4e-19 AT5G41330 579 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.001G102300 [exp] 86 / 8e-19 AT5G41330 568 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004834 pacid=23158621 polypeptide=Lus10004834 locus=Lus10004834.g ID=Lus10004834.BGIv1.0 annot-version=v1.0 ATGGACAACGGAAATTCCCACTCTGTCGGCAGCGACCACCGTATCAAGCTCAACGTCGGTGGCAAGCTCTTCCAGACCACCGTCTCTACTCTCCAGTCCA GCGGTCCGGATTCAGTCCTTGCAGCACTCTCAACTCGGGAGAATTGCATACTGATCATAGACAAAACAACCCTCCAGGTTGAATCGGAGATCGGAAGGCA ATCCCCCAGCCAATCTAGGAAAAGCGTCCCCGGGAAGTTGACGTGGCTGCCGAGGACCGGTGTAGTGATTGCAACAGCAGTTACTTTTGGGGCGTTTGGC TACTCCGGCTACATCAGGATCTGGGATCCTAGATCTGGTGACGTGGTTTGGGAGACGAACGAACCAGGTTCGGGTCGGAGCAGCAGGTTCGGGGATTCGT TCTCCGACGTGGCTGTTGATGTGAAGGAGTCAACTTTGTTCAAGGTTTGTTCCAAATCCGGTGATTTAGGGGTAGCTGATATCCGTTATTTGGGTGATGA TCCGTGGGTGTATTTAGAAGATAAAAATCCCAGCCTGAGACATACTGGTGAGCCTGGAATTAGCAACGTATTGCATTGCTATAAGGGTCAGGTTTTTGTG GGAAGAGATGGAGCCTTGGAAGTTTGGTCGAGAGTTCAGGAGAATGAAGGAAGCGGAGGAGTGGAAGAGGAAGGAGGCAGAGTGATGACAGAAGATGATA AGTACAGAAGGAATTTTGTGGATAAACTGGAGGATTCAGAGAAAGGGATCATCAGGAAGATTGAAGGAGGTGGGAATCGGTTGTTCGTCAGTAGGGAAGA GGTTGAGGGGATTGAAGTTTGGGAAAGTTCCAATCTTTCTGCTGCAGTCTCAGTTTTGTGA
AA sequence Show only first row Show all	>Lus10004834 pacid=23158621 polypeptide=Lus10004834 locus=Lus10004834.g ID=Lus10004834.BGIv1.0 annot-version=v1.0 MDNGNSHSVGSDHRIKLNVGGKLFQTTVSTLQSSGPDSVLAALSTRENCILIIDKTTLQVESEIGRQSPSQSRKSVPGKLTWLPRTGVVIATAVTFGAFG YSGYIRIWDPRSGDVVWETNEPGSGRSSRFGDSFSDVAVDVKESTLFKVCSKSGDLGVADIRYLGDDPWVYLEDKNPSLRHTGEPGISNVLHCYKGQVFV GRDGALEVWSRVQENEGSGGVEEEGGRVMTEDDKYRRNFVDKLEDSEKGIIRKIEGGGNRLFVSREEVEGIEVWESSNLSAAVSVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09030			BTB/POZ domain-containing prot...		Lus10004834 [exp]	0	1
AT1G33490			unknown protein		Lus10039157 [exp]	4.7	0.8157
AT3G61180			RING/U-box superfamily protein...		Lus10041359 [exp]	7.7	0.8256
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10022612 [exp]	8.8	0.7963
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10016980 [exp]	11.0	0.7863
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10041500 [exp]	12.4	0.7874
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10018169 [exp]	14.5	0.7729
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10037412 [exp]	15.8	0.8095
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10006771 [exp]	16.3	0.7941
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10036272 [exp]	17.2	0.7995
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10034452 [exp]	17.7	0.7910

Compare expression of checked genes

Lus10004834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.