Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38110 321 / 1e-108 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT1G01610 245 / 4e-79 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT4G00400 234 / 6e-75 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT3G11430 136 / 9e-38 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 125 / 2e-33 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT1G06520 107 / 8e-27 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT3G11325 89 / 6e-21 Phospholipid/glycerol acyltransferase family protein (.1) AT1G02390 90 / 7e-21 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT4G01950 79 / 5e-17 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002501 [exp] 374 / 3e-131 AT2G38110 330 / 2e-109 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 285 / 7e-95 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10018832 [exp] 249 / 3e-81 AT3G11430 390 / 3e-132 glycerol-3-phosphate acyltransferase 5 (.1) Lus10017794 [exp] 247 / 2e-80 AT3G11430 392 / 5e-133 glycerol-3-phosphate acyltransferase 5 (.1) Lus10036684 [exp] 207 / 2e-64 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10010741 [exp] 207 / 4e-64 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004833 [exp] 127 / 1e-34 AT2G38110 512 / 3e-180 glycerol-3-phosphate acyltransferase 6 (.1) Lus10010934 [exp] 129 / 2e-34 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 122 / 3e-32 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G097800 [exp] 355 / 4e-122 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 343 / 3e-117 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.014G085500 [exp] 265 / 9e-87 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.016G063900 [exp] 226 / 9e-72 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 221 / 5e-70 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.005G202200 [exp] 144 / 4e-40 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.010G201200 [exp] 142 / 6e-40 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.008G058200 [exp] 128 / 1e-34 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.002G192600 [exp] 73 / 5e-15 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004835 pacid=23158607 polypeptide=Lus10004835 locus=Lus10004835.g ID=Lus10004835.BGIv1.0 annot-version=v1.0 ATGGCAACGCGACGCCGTTTCGAACCGGTCACCAAATGCCCCACAGAAGGCCGGTCGAACCAGGCAGTGGCAGCCGACCTGGACGGGACCCTCCTCGTCT CAACAAACTCCTTCCCTTACTTCCTCCTCGTCGCCCTCGAGGCCGGAAGCCTGCCCCGCGCCGTGCTGCTCCTCGTATCCGTCCCGTTCGTCTACGTCAC CTACCTTTTTGTCTCCGATGCCCTTGCCATCAAGACCTTCGTCTTCATAGCCTTGTCAGGTCTCAAGATGTGCGACATCGAGCTCGTTGCCCGGTCTGTC CTCCCTAGGTTCTACGCCGATGACGTCCACCCGGACACGTGGAGGGTGTTTAATTCGTTCGGGAAGAGGTATATTGTGACCGCAAACCCACGTGTAATGG TGGAGCCGTTTGTGAAGACCTTCTTGGGTGCTGACAAGGTGCTAGGGACTGAACTGGAGGTTACTAAATCGGGTCGGGCTACCGGGTTTGTGAAGAGACC CGGGATACTGGTAGGGAAGCATAAAAGGGATGCGATGCTCAAGGAATTTGGGTCGGAAGACTTGCCTGATTTGGGTCTTGGAGATCGGGAGACCGATCAT GATTTCATGTCATTGTGTAAGGTACGTACCTAA
AA sequence Show only first row Show all	>Lus10004835 pacid=23158607 polypeptide=Lus10004835 locus=Lus10004835.g ID=Lus10004835.BGIv1.0 annot-version=v1.0 MATRRRFEPVTKCPTEGRSNQAVAADLDGTLLVSTNSFPYFLLVALEAGSLPRAVLLLVSVPFVYVTYLFVSDALAIKTFVFIALSGLKMCDIELVARSV LPRFYADDVHPDTWRVFNSFGKRYIVTANPRVMVEPFVKTFLGADKVLGTELEVTKSGRATGFVKRPGILVGKHKRDAMLKEFGSEDLPDLGLGDRETDH DFMSLCKVRT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030646 [exp]	1.7	0.9192
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10026769 [exp]	1.7	0.8786
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10026281 [exp]	2.8	0.9146
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000957 [exp]	5.0	0.8778
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Lus10013957 [exp]	6.7	0.8493
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10016528 [exp]	6.9	0.8711
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	6.9	0.8780
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10035903 [exp]	8.8	0.8713
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030840 [exp]	9.9	0.8685
AT3G62650			unknown protein		Lus10010026 [exp]	10.2	0.8357

Compare expression of checked genes

Lus10004835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.