Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13800 529 / 0 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2) AT1G30300 202 / 1e-62 Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT4G03610 164 / 6e-48 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023286 [exp] 204 / 5e-63 AT1G30300 527 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10038519 [exp] 132 / 2e-36 AT1G30300 323 / 3e-111 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G036800 [exp] 565 / 0 AT3G13800 515 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2) Potri.011G081600 [exp] 209 / 4e-65 AT1G30300 506 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10004844 pacid=23175246 polypeptide=Lus10004844 locus=Lus10004844.g ID=Lus10004844.BGIv1.0 annot-version=v1.0 ATGGTTCAGTTTCTGGGTTCCGTTCGTCTGAATCCTTGCGCTCTGGCCAGTTTAGCGCCTTCTAGACTCCAATTCTCCCTTCGAAGTTCGTTATTCTCGC CCTCCAAAATCGGGTTCTCTCCTTTCAGAACCATTCTTCAAGCTTGCCTTCAATCTAATGCAAGTGGGAAAGTTTATGCACAGTTACCTCCAGACCAATC TGAGATCATATTCATGGGAACAGGAACTAGTGAAGGCATTCCTCGTCTAAGCTGCCTGACTAATCCACTGAAGAAATGTCAGGTGTGTTCAAAAGCTACA GAACCGGGTAATAAGAATAGGAGGCTTAACACTAGCATCCTGATTCGCTATCCTGGTCCTGGCGGTCCACGTAACGTTCTGATAGATGCCGGCAAGTTCT TTTACCATAGTGTTCTTCAGTGGTTTCCTGCATATGGGCTAAGAACAATTGATGCGGTTATTATTACTCATTCCCATGCTGATGCCATTGGAGGACTAGA CGACCTCCGTGATTGGACAAACAATGTGCAGCCGTACATACCAATATATGTTGCACCCCGTGATTTTGAGGTGATGAAGAAGACTCATTATTACTTAGTT GACACAAGTGTGATTATACCTGGAGCGGCGGTTTCAGAGTTGCAATTCAACATCATACACGAGGAACCCTTCATTGTCAATGACTTAATGTTTACGCCTT TGCCAGTGTGGCATGGAAACGGTTACCGTTCCCTTGGTTTTCGATTCGGTAATGTATGTTACATCAGTGATGTCAGTGATATACCAGAAGAAACTTACGC GCTTCTTGAGGATTGTGACCTCTTGATTATGGATGCTTTGAGACCTGATCGGTCTTCCTCTACACACTTTGGGCTCCCAAGGGCCTTAGACGAAGTACGA AAAATCAAACCAAGGAGAACTCTTTTCACTGGTATGATGCACCTAATGGATCACGACAAGGTGAATGAATACCTGATGAAGTTGATGGAGACGGAAGGTC TTGATGTACAGTTAAGCTATGATGGGTTGCGGGTGCCTGTGATTCTCTGA
AA sequence Show only first row Show all	>Lus10004844 pacid=23175246 polypeptide=Lus10004844 locus=Lus10004844.g ID=Lus10004844.BGIv1.0 annot-version=v1.0 MVQFLGSVRLNPCALASLAPSRLQFSLRSSLFSPSKIGFSPFRTILQACLQSNASGKVYAQLPPDQSEIIFMGTGTSEGIPRLSCLTNPLKKCQVCSKAT EPGNKNRRLNTSILIRYPGPGGPRNVLIDAGKFFYHSVLQWFPAYGLRTIDAVIITHSHADAIGGLDDLRDWTNNVQPYIPIYVAPRDFEVMKKTHYYLV DTSVIIPGAAVSELQFNIIHEEPFIVNDLMFTPLPVWHGNGYRSLGFRFGNVCYISDVSDIPEETYALLEDCDLLIMDALRPDRSSSTHFGLPRALDEVR KIKPRRTLFTGMMHLMDHDKVNEYLMKLMETEGLDVQLSYDGLRVPVIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13800			Metallo-hydrolase/oxidoreducta...		Lus10004844 [exp]	0	1
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Lus10037580 [exp]	5.1	0.6929
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10037741 [exp]	12.6	0.7539
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10006934 [exp]	19.1	0.7052
AT5G08415			Radical SAM superfamily protei...		Lus10041005 [exp]	19.5	0.6981
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10032251 [exp]	21.6	0.7149
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10024613 [exp]	29.1	0.7110
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10018245 [exp]	37.1	0.7006
					Lus10004928 [exp]	44.5	0.6566
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10023224 [exp]	50.0	0.6969
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10028358 [exp]	59.3	0.6763

Compare expression of checked genes

Lus10004844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.