Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27385 114 / 1e-32 Pollen Ole e 1 allergen and extensin family protein (.1.2.3) AT5G22430 103 / 3e-28 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020642 [exp] 264 / 3e-91 AT2G27385 132 / 2e-39 Pollen Ole e 1 allergen and extensin family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G019300 [exp] 130 / 1e-38 AT5G22430 129 / 2e-38 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10004847 pacid=23157173 polypeptide=Lus10004847 locus=Lus10004847.g ID=Lus10004847.BGIv1.0 annot-version=v1.0 ATGGCGGTTCCACTACTACTCATCTCCTTCATAGCCTTCCTGGCCATTTCCTCTCAGCAGCAGCTTGGAGCTGCCGCCAATTCCCCTGTTGTCAAAGGCA GAGTCTCCTGCTTTGACTGCAGTCCTCATTATGACTTTTCTGGCGTACTGATTTCCGTCAAGTGTGACGGCGACAGAAAGTTGGCCATAACAGGAACTGA TAAGGATGGATCTTTCCAAGCAGAGCTTCCTTCAGCAACTTCTCAAAACTGTATGGCTAAGCTTCTAGGTGGCCAAACCAAGCTCTATGCTTCAAGAGCA GACCTTATCTCCAAGATTGTGAAGTCTTCCACCACTACTACTGACATAGATTCCTACACAATCTCAACTCCGCTGGCTTTCTCCACCGCCTGCCCTACGG GGAAGGCAAGCTACTGCAGTGGCCGAAACGGGCTTGGTTCGTCGAAGACTGTCGACCTTCCGATCCCCAAGGAGTGGGGGCTTGCTCCTACTAGCTACTA CATCAACCCTTTCGTCCCCATTATTGGGATCCCTTGA
AA sequence Show only first row Show all	>Lus10004847 pacid=23157173 polypeptide=Lus10004847 locus=Lus10004847.g ID=Lus10004847.BGIv1.0 annot-version=v1.0 MAVPLLLISFIAFLAISSQQQLGAAANSPVVKGRVSCFDCSPHYDFSGVLISVKCDGDRKLAITGTDKDGSFQAELPSATSQNCMAKLLGGQTKLYASRA DLISKIVKSSTTTTDIDSYTISTPLAFSTACPTGKASYCSGRNGLGSSKTVDLPIPKEWGLAPTSYYINPFVPIIGIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10004847 [exp]	0	1
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10020642 [exp]	1.0	0.9803
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10015883 [exp]	2.8	0.9418
AT1G19400			Erythronate-4-phosphate dehydr...		Lus10042323 [exp]	3.2	0.9150
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	4.2	0.9171
AT5G54010			UDP-Glycosyltransferase superf...		Lus10013337 [exp]	4.9	0.9331
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10030404 [exp]	5.0	0.8879
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10015376 [exp]	5.9	0.9247
AT5G62360			Plant invertase/pectin methyle...		Lus10031138 [exp]	6.2	0.9355
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10033003 [exp]	6.7	0.9035
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034035 [exp]	6.7	0.9325

Compare expression of checked genes

Lus10004847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.