Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27750 50 / 1e-07 F-box/FBD-like domains containing protein (.1) AT1G13780 49 / 3e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G04230 46 / 3e-06 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G78750 45 / 4e-06 F-box/RNI-like superfamily protein (.1) AT1G67390 45 / 9e-06 F-box family protein (.1) AT3G03030 45 / 9e-06 F-box/RNI-like superfamily protein (.1) AT5G22730 45 / 9e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56810 44 / 9e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G13985 44 / 1e-05 FBD1 FBD-associated F-box protein (.1) AT5G44940 44 / 1e-05 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004851 [exp] 114 / 1e-30 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 88 / 1e-20 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10011048 [exp] 71 / 5e-15 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10028366 [exp] 69 / 2e-14 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 69 / 3e-14 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10020636 [exp] 60 / 1e-12 AT5G56810 52 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10020634 [exp] 59 / 6e-12 AT4G14103 57 / 1e-10 F-box/RNI-like superfamily protein (.1.2) Lus10020635 [exp] 59 / 6e-12 AT4G14103 57 / 1e-10 F-box/RNI-like superfamily protein (.1.2) Lus10020637 [exp] 55 / 2e-09 AT3G58940 47 / 3e-06 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G107600 [exp] 65 / 8e-13 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 49 / 3e-07 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 45 / 5e-06 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.013G146800 [exp] 44 / 2e-05 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 42 / 0.0001 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024600 [exp] 41 / 0.0001 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.010G134200 [exp] 40 / 0.0002 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.015G011200 [exp] 40 / 0.0002 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.014G163866 [exp] 39 / 0.0008 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.001G337200 [exp] 39 / 0.001 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004848 pacid=23157178 polypeptide=Lus10004848 locus=Lus10004848.g ID=Lus10004848.BGIv1.0 annot-version=v1.0 ATGGCAGGAAATTCCATAGACAGGATCAGCAGCACCTTACCAGACGATGTTAGGTTGCAGATACTCATGTACTTACCGTTACTCGACGCAGCCAAGTCCA GCATCCTGTCGTCCAAATTGAGGAACCTGTGGACTAATCTCCCAACTCTGGTGATCGACGAAAGTTTTGGTGACGCTACTTATAAGCAAGAACTACAAGA TAGAAGTCGTCCTTATCAGATCGATCACGTCTCGTCGTTCCTCCCTTTCAATACTCTCGAGAATCTAACCCTGGAAGGATTCTGCAAGTTGTCAGAGACC GTGTTCTCCTCAATTTCGCGGCTCGAAACGCTGCGCCTGTCTTTCAGTACGTTCGTAGTCCCCTGTGTTTCGTTTGAGGGGTTCGATAGTTTGGCTGTTC TCGAGATTCGTCACGTGTCGTTTCCTCGCGACGGGTTTGATCAAAATCACCTAGGGAGCCGTGGATGA
AA sequence Show only first row Show all	>Lus10004848 pacid=23157178 polypeptide=Lus10004848 locus=Lus10004848.g ID=Lus10004848.BGIv1.0 annot-version=v1.0 MAGNSIDRISSTLPDDVRLQILMYLPLLDAAKSSILSSKLRNLWTNLPTLVIDESFGDATYKQELQDRSRPYQIDHVSSFLPFNTLENLTLEGFCKLSET VFSSISRLETLRLSFSTFVVPCVSFEGFDSLAVLEIRHVSFPRDGFDQNHLGSRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27750			F-box/FBD-like domains contain...		Lus10004848 [exp]	0	1
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10012508 [exp]	2.6	0.7159
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10024846 [exp]	3.2	0.6836
AT1G25275			unknown protein		Lus10004192 [exp]	10.8	0.6681
AT5G12390		FIS1B	FISSION 1B, Tetratricopeptide ...		Lus10009707 [exp]	16.2	0.6015
AT5G59190			subtilase family protein (.1)		Lus10040251 [exp]	16.3	0.6683
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10013314 [exp]	17.0	0.6514
					Lus10034814 [exp]	19.0	0.6083
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10018890 [exp]	31.4	0.5325
AT5G42905			Polynucleotidyl transferase, r...		Lus10007550 [exp]	32.8	0.5608
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10008198 [exp]	36.1	0.5506

Compare expression of checked genes

Lus10004848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.