Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026712 [exp] 149 / 1e-43 AT3G44590 97 / 2e-25 60S acidic ribosomal protein family (.1.2) Lus10020638 [exp] 139 / 3e-41 AT1G13570 37 / 0.002 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 146 / 2e-40 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10020637 [exp] 118 / 3e-32 AT3G58940 47 / 3e-06 F-box/RNI-like superfamily protein (.1) Lus10003016 [exp] 84 / 3e-18 AT1G13570 81 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10011048 [exp] 80 / 6e-17 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 76 / 1e-15 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10004853 [exp] 71 / 5e-14 ND / Lus10015828 [exp] 65 / 9e-13 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004849 pacid=23157181 polypeptide=Lus10004849 locus=Lus10004849.g ID=Lus10004849.BGIv1.0 annot-version=v1.0 ATGAAGGACGCTACAGAATCTTTCAAAACTACAAAAGCTGTCAGGGCGTTTGTTCTCATCGGTCAAGACTTTGCACTTTTCCAATGTGAAGTCGAATCGT CCACCAATTTGTTTTTCGAAGGCTTTGTTAACCTTACTGTTCTTGAACTTAACCATTTTACAATCACTGGCCTAAATTTTGGAGCATTAGATGCCCGTTA CTTGCATCGTTATCCCTGGATGAATGTTCTTGCTCTCTCCATTTCAAGCATACCCCAGTTCTTAAAAAAGCTACCATCAATACTACAGAATATTCCAGCT CAAGTCATCAGGCTTGCTCAGAGTATGGGGAGGACTTACAATCGCTTTCTGTGTCCGGTCGATTTTGCGAGCACCTTGCAGGAGCAAGCTAAAGATCTGA GCCTTTGGAAGATGCTTAGGCATTTAACATTTCATAACGTGCATTTGAGCTGGCAAAGCCTTGTGATTACGAGTTTGCCCAATCTGGAACGACTCGAAAT TATCATTCAGGGCGAATCTACGACTTCAGTGTCGAACATAAGTTTTCATGGAGGATACGAGTTTGAGCTAAGTCGACTGAAGAGAGTGGAAGTGAAGCAG CTGAAGGGTACAAAACAAGAACTGGGTTTCATAAAATGGTTGCTCAACTCATCCCCTGCACTTGACATCATCAAAATCAAGCTGTCCACAAAATTATCAG ATGCTGAAAGGACATTGAATCTAGCAGAGTTGAATTCAGAGTTGCATGCATTTGCGAGAGCCTCAAACGGAGCACTAATCGAGATTGACAACCACATTCG TACCTGA
AA sequence Show only first row Show all	>Lus10004849 pacid=23157181 polypeptide=Lus10004849 locus=Lus10004849.g ID=Lus10004849.BGIv1.0 annot-version=v1.0 MKDATESFKTTKAVRAFVLIGQDFALFQCEVESSTNLFFEGFVNLTVLELNHFTITGLNFGALDARYLHRYPWMNVLALSISSIPQFLKKLPSILQNIPA QVIRLAQSMGRTYNRFLCPVDFASTLQEQAKDLSLWKMLRHLTFHNVHLSWQSLVITSLPNLERLEIIIQGESTTSVSNISFHGGYEFELSRLKRVEVKQ LKGTKQELGFIKWLLNSSPALDIIKIKLSTKLSDAERTLNLAELNSELHAFARASNGALIEIDNHIRT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004849 [exp]	0	1
					Lus10011452 [exp]	1.4	0.9813
					Lus10018224 [exp]	2.0	0.9763
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10007246 [exp]	2.4	0.9544
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	5.3	0.9215
					Lus10020978 [exp]	5.9	0.9135
					Lus10007554 [exp]	6.9	0.9180
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10002691 [exp]	8.5	0.9027
AT1G75800			Pathogenesis-related thaumatin...		Lus10023897 [exp]	10.5	0.8767
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Lus10010974 [exp]	10.8	0.8581
					Lus10021894 [exp]	12.2	0.8820

Compare expression of checked genes

Lus10004849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.