Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24500 52 / 2e-07 hydroxyproline-rich glycoprotein family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020639 [exp] 437 / 5e-155 AT4G24500 51 / 3e-07 hydroxyproline-rich glycoprotein family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111500 [exp] 126 / 2e-33 AT4G24500 75 / 4e-15 hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.005G153300 [exp] 112 / 3e-28 AT4G24500 61 / 2e-10 hydroxyproline-rich glycoprotein family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004850 pacid=23157188 polypeptide=Lus10004850 locus=Lus10004850.g ID=Lus10004850.BGIv1.0 annot-version=v1.0 ATGGAGGAGAATTCGGAGAGCAGAAGCGATAGATTGAAAGCAATGCGGGCTGTGGCGGCCGATGCTGCTTCTAGTGGTCTCCCGGCGATTCCTGGAGTGC TAGCTAATCCAATGTTGGACGGGCCTTCAGAAGCTGAGACTAGGCGTGGCGGTGGTGTTCCGCGGTTTGATTTCTACACTGATCCTATGGCTGCCTTTTC CAGTACTAGGAATAGAAATCCTCCTCTTCACAACACTCCTGGTAATTTCATTCCTCCAGCCGGAAGATTGCCTCCTCCTCCAGCTTGGATTCCTCCGTCT CCTTCCCCAGGTTACTGCCTCAAAATTCCTGATCTTGTAACTGGACCATGGAATCCGACCCCGAGATCAACACCTCCACATATGCAAGGCGATTATCCAG TTAATCAAGGTATGTATCAAGGTAACATACCATACGGGAGCCAAGGTAGCATTAGAAGCCCGTTCCCATTTAACCAACGAGCTCCTCATCCGCAACCATG GAGTGAATTTGCCGATCCAGCTGCCAATTATGGCTCGCATCCTCGTGGAGGAATGCCTGGTGTGAGCCCTAGGTATCATCAGGGAAATCCTAACTATGCA CCAGTAAGAAGCCCTAGTTCAGGTTATGGACGTCATCAATTTCCCAGTTCAGGCCGAGGTAACAGAAGCTCGGTCTTTGGACGTGGCAATGGGCGAGGGA GAGGTTTTCACAATCATGGTTCTACATCCAGTGAAAAACAAGACCCGTGGAAATTCTATCACGACTCCATGGTGAAAGATCCATGGGAGGGTTTAGAACC GATTGAATGGAGAGGAATAACAACTGGGTCTTCTGATTCCTGGATGCCGAGTTCCGTTACCACGAAAAGGCCGCGGGGAGGGCCGGTATCATCTTTTAAT CAGTCGAATTCTGGACAGAGCCTTGCCGATTACCTTGCTTCCTCGTTTAACGAAGCTTCCAACGCTGAGCAGAACACTTGA
AA sequence Show only first row Show all	>Lus10004850 pacid=23157188 polypeptide=Lus10004850 locus=Lus10004850.g ID=Lus10004850.BGIv1.0 annot-version=v1.0 MEENSESRSDRLKAMRAVAADAASSGLPAIPGVLANPMLDGPSEAETRRGGGVPRFDFYTDPMAAFSSTRNRNPPLHNTPGNFIPPAGRLPPPPAWIPPS PSPGYCLKIPDLVTGPWNPTPRSTPPHMQGDYPVNQGMYQGNIPYGSQGSIRSPFPFNQRAPHPQPWSEFADPAANYGSHPRGGMPGVSPRYHQGNPNYA PVRSPSSGYGRHQFPSSGRGNRSSVFGRGNGRGRGFHNHGSTSSEKQDPWKFYHDSMVKDPWEGLEPIEWRGITTGSSDSWMPSSVTTKRPRGGPVSSFN QSNSGQSLADYLASSFNEASNAEQNT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24500			hydroxyproline-rich glycoprote...		Lus10004850 [exp]	0	1
AT2G03640			Nuclear transport factor 2 (NT...		Lus10004644 [exp]	10.6	0.7637
AT5G40660			ATP12 protein-related (.1)		Lus10009910 [exp]	21.1	0.8169
AT3G18790			unknown protein		Lus10023225 [exp]	44.8	0.7876
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10038681 [exp]	45.3	0.7581
AT1G27090			glycine-rich protein (.1)		Lus10036699 [exp]	53.9	0.7838
AT4G36130			Ribosomal protein L2 family (....		Lus10025966 [exp]	88.5	0.7542
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031764 [exp]	95.3	0.7601
AT1G25360			Pentatricopeptide repeat (PPR)...		Lus10028106 [exp]	96.3	0.7565
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025336 [exp]	97.9	0.7597
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10025466 [exp]	113.8	0.7365

Compare expression of checked genes

Lus10004850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.