Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 125 / 7e-32 F-box/RNI-like superfamily protein (.1) AT4G14103 71 / 4e-13 F-box/RNI-like superfamily protein (.1.2) AT4G14096 69 / 2e-12 F-box/RNI-like superfamily protein (.1) AT3G03030 66 / 1e-11 F-box/RNI-like superfamily protein (.1) AT3G58900 61 / 5e-10 F-box/RNI-like superfamily protein (.1.2.3.4) AT3G59200 61 / 8e-10 F-box/RNI-like superfamily protein (.1) AT3G58940 61 / 1e-09 F-box/RNI-like superfamily protein (.1) AT5G56810 60 / 1e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G13960 59 / 2e-09 F-box/RNI-like superfamily protein (.1) AT3G62440 59 / 3e-09 SAF1 secondary wall thickening-associated F-box 1, F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011048 [exp] 244 / 2e-76 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 244 / 1e-75 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10003016 [exp] 172 / 2e-49 AT1G13570 81 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10013071 [exp] 159 / 2e-42 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3) Lus10034418 [exp] 149 / 5e-39 AT1G13570 148 / 1e-38 F-box/RNI-like superfamily protein (.1) Lus10004853 [exp] 133 / 4e-35 ND / Lus10029077 [exp] 125 / 7e-32 AT1G13570 82 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10004848 [exp] 114 / 3e-30 AT5G27750 50 / 1e-07 F-box/FBD-like domains containing protein (.1) Lus10034414 [exp] 113 / 2e-27 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134200 [exp] 120 / 4e-30 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 112 / 3e-27 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 111 / 8e-27 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 110 / 1e-26 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 96 / 2e-21 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.014G163866 [exp] 58 / 3e-09 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.001G322900 [exp] 54 / 1e-07 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G121500 [exp] 54 / 2e-07 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.001G337200 [exp] 52 / 3e-07 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024200 [exp] 51 / 9e-07 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10004851 pacid=23157157 polypeptide=Lus10004851 locus=Lus10004851.g ID=Lus10004851.BGIv1.0 annot-version=v1.0 ATGGCAACCAAGTCTGCTGATAGAATCAGCAGATTGCCAAACGATGTTAGAGTTCATATCCTGACGTTCTTACCACTACGGGAAGCAGCTAAGTCCAGTG TCCTATCGTCTAAATGGAGGAACCTCTGGACCAATCTCCCAACTCTCGTCATCGACGAGAGTATATGCAAGTCTGATGTGGTGGACAGAGTAATGTTGAA TATCCAGGGGGTGTTGTTGCTTCACGGTGGACCCTTGAAGGATTTCTCTCTTTCGCATTCGAGGCTGGGCCCTGAGACTTATCATATCCTTCGAATGCTT CCCTACCAAAATCTTGAGTCTCTTACCATTCAAGCCGGAGTATACAACTGCAAGGCGACAAACCAGGTTTTCTCGTCATTTTACCGACTGAAGAAGTTGT TCCTATATTGGTGTGAATTTACTTTCTCCCCTATTTCATTTGAGGGGTTTGAACGGCTTACTGTGGTAGAGCTTCAGTTTGTGATGTTCCAAAAGAATCT AACTCAGTTGCGATTTAAGTGCCCATTGCTTACAACCCTGACTTTAAGTTCCTGGGAAAATCCCATCATTGTGATAGTAGAAGCTCCAAACCTTAGTTTC TCCCACTTCGGTGGTAGCTTTTCATCTCTACGTTTTCACCATACTCCTCGTCTTAAGCATGTTATCATCAACAAACAGAATGTACTGTCGAAAGGCAAGA AATTTGTACGAGGCCTGCTTGAAACTAATGGGGGTCTTGCTGCGGTAGAGTCCCTTTCTGTGGGTAGTCATTTTTACGAGTACCTGGCAACACGAGTTAC TCCAGATCTTGAGGATATTTGCGAGCCGTGGAAGAAGTTAAGGCGTTTAAGGTTGGATGATGTGTGTTTGAGCACAGGAAGCCACCTTTGGTCTGTTGTT TGCATGATAATTGCTTCTCCTAACCTGCAACAACTATCAATCCTGATGTTGGTACTTACTGATCCCGATACGGAGGGTTTCAATGGCTACAGTGAAGCAT TACACAGAATGCAATCTGGTGCTGTTACTGGATCCATATCTGACACGAGACGAATGCTAACGAGGGTGGAAGTGAAGATTGTCAAAGGTACAAGGAATGA GATGACTTTTATTGAATGGTTACTGAACATTTCTCCAATGCTGGAAGAGATGAAGATCCAACTGTACACTGAGCTATCAGATGCTGAAAAGTTGTTGATT ATGGCTGAGTTGAATGGATTCCAGAGAGCATCAATCAGAGCACGAATCACACTCAAATGA
AA sequence Show only first row Show all	>Lus10004851 pacid=23157157 polypeptide=Lus10004851 locus=Lus10004851.g ID=Lus10004851.BGIv1.0 annot-version=v1.0 MATKSADRISRLPNDVRVHILTFLPLREAAKSSVLSSKWRNLWTNLPTLVIDESICKSDVVDRVMLNIQGVLLLHGGPLKDFSLSHSRLGPETYHILRML PYQNLESLTIQAGVYNCKATNQVFSSFYRLKKLFLYWCEFTFSPISFEGFERLTVVELQFVMFQKNLTQLRFKCPLLTTLTLSSWENPIIVIVEAPNLSF SHFGGSFSSLRFHHTPRLKHVIINKQNVLSKGKKFVRGLLETNGGLAAVESLSVGSHFYEYLATRVTPDLEDICEPWKKLRRLRLDDVCLSTGSHLWSVV CMIIASPNLQQLSILMLVLTDPDTEGFNGYSEALHRMQSGAVTGSISDTRRMLTRVEVKIVKGTRNEMTFIEWLLNISPMLEEMKIQLYTELSDAEKLLI MAELNGFQRASIRARITLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10004851 [exp]	0	1
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10041471 [exp]	7.4	0.7714
AT5G14090			unknown protein		Lus10037042 [exp]	11.7	0.7981
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10015764 [exp]	15.3	0.7927
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10026650 [exp]	15.8	0.7558
AT1G71150			unknown protein		Lus10007946 [exp]	15.8	0.7851
AT2G01870			unknown protein		Lus10009946 [exp]	23.7	0.7976
					Lus10030126 [exp]	26.0	0.7360
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10021037 [exp]	28.5	0.7721
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10019726 [exp]	28.6	0.7713
AT3G48200			unknown protein		Lus10008827 [exp]	30.5	0.7775

Compare expression of checked genes

Lus10004851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.