Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 146 / 1e-38 F-box/RNI-like superfamily protein (.1) AT5G54820 66 / 2e-11 F-box/RNI-like superfamily protein (.1) AT5G02910 62 / 2e-10 F-box/RNI-like superfamily protein (.1.2) AT5G56810 63 / 3e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G04230 61 / 1e-09 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G44950 59 / 3e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G26922 58 / 4e-09 F-box/RNI-like superfamily protein (.1) AT2G42720 58 / 6e-09 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT4G00160 58 / 6e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G39415 54 / 7e-09 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011048 [exp] 307 / 1e-99 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 269 / 6e-85 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10003016 [exp] 226 / 3e-69 AT1G13570 81 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10034418 [exp] 191 / 4e-53 AT1G13570 148 / 1e-38 F-box/RNI-like superfamily protein (.1) Lus10026712 [exp] 164 / 3e-47 AT3G44590 97 / 2e-25 60S acidic ribosomal protein family (.1.2) Lus10013071 [exp] 171 / 6e-46 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3) Lus10020638 [exp] 153 / 2e-44 AT1G13570 37 / 0.002 F-box/RNI-like superfamily protein (.1) Lus10020637 [exp] 147 / 2e-41 AT3G58940 47 / 3e-06 F-box/RNI-like superfamily protein (.1) Lus10004853 [exp] 145 / 6e-39 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134200 [exp] 139 / 5e-36 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 135 / 1e-34 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 126 / 1e-31 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 118 / 1e-28 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 99 / 4e-22 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 69 / 2e-12 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024200 [exp] 61 / 1e-09 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G136200 [exp] 59 / 5e-09 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.014G163866 [exp] 56 / 2e-08 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.011G121500 [exp] 54 / 1e-07 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10004852 pacid=23157169 polypeptide=Lus10004852 locus=Lus10004852.g ID=Lus10004852.BGIv1.0 annot-version=v1.0 ATGGCAGATGACGGCGATGGTGCAGACAGAATCAGTAGCTTACCGAACAATGTTCGGGAGCATATCCTCATGTTCTTACCACTACGCGACGCAGCCAGGG CGAGCATCCTGTCGACGAATTGGAGGAACATGTGGATGGATCTCCCTACACTCGTATTCGACGAAAATTTCGGAAACCAAGAAGAAAACTCGGTGGACAA GGTAATGTTCGATGTATGCACAGTCCTGCTTCTCCACCGTGGACCCTTGAAGGAGTTCTCTCTTTCGATCCCCGTGCTGAGAAACTACCCCGATCAGCTC GATCAGATCTTGATGTTCCTGAAGAATAACAAACGCAGCATCGAAAGCCTGACGATCAAGGAGGAAGGATGCTACCCGTATGAAAAATACAAGCTATCGA GGCGTCTGGTGTCGTTTTCTCAGCTGAAGACTCTGCGCTTGTCCGACTGTAAAGTCAAATCTACCCCTGATGAGTTCCGAGGTTTTGTTAACCTTACTGT TCTTGGACTTAAGAATGTTGTATTCGCCGACTCAGGCGACTCGTCTCTAGTTTGGAGGTTTGCATTCTCATTGCTTTCGTATTTAACTCTGGATAACTGC ATTGTTAAAACTCCCTCGTGGAATTCGAGTCATAGTATCGTGATCGAGGCTCCGAGACTTAGTTGTTTCCATCTGGCTGGGGAATTCGCCCGTCTCAAAT TCAAACACACCCCAGTGCTCCAGAAAGCCACCCTTGACCGCAAGTATTATACCCCAGTTGCGGTGAACTCGGCCTTCCTGGACATATGGGGAGGACTTGC TGCTGTCGAGTCGCTTTCTGTGTCCGGTAGATTCTGCGAGTATCTTGAACACAGTGTTGAGGAATCTAATGGTCTCAGCCCATTGGAGATGCTGAGGCAT TTGACGTACCGCAATGTGTGTTTGAGTAGACAAAGTTATGTTGATACCGTTCTCGTGATGATTACGAGTTCTCCTAATCTACAACGACTCGAAATTATCA TGGAGGACAATTCTGGTTCGGTGCCGAATTTAAGTTTTCATAAAGGACAAACCGAGTTTGAGCTTAGTCGATTGACGAGAGTGGAAGTGAAGAAGCTGAA GGGTGCAGAACATGAACTGGATTTCATAAATTGGTTGCTGAACTCCTGTCCTGCACTTGACATTATGAAAATCAAGATGTCCTCGAAATTATCAGATTCC GAAAAGATAATGATTCTGACAGAGTTGAATGGATTTGCGAGAGCCTCGCCTAGAGCGCTACTTGAAATTACAATGCGGGAGGGCATTGATGTGTCAAACA TATGTTTTCATGGACCGTCGAAGTTTGAGCTTCTTCGACTGGAGACAGTGGAAGTGAAGGAGCTGAAGAGTACAGAACATGAACTGGGTTTCAATAAATG GTTGCTGAGTTCATCTCCTGCACTTGACATTATGAAAAATCAACCTGTCCTCGTATTTATCAGATGCAGAAAGGATACTGATTGTAGCCGAGTTGAACGG AATTTGCGAGAGCCTCAACCAGAGCGGTACTGA
AA sequence Show only first row Show all	>Lus10004852 pacid=23157169 polypeptide=Lus10004852 locus=Lus10004852.g ID=Lus10004852.BGIv1.0 annot-version=v1.0 MADDGDGADRISSLPNNVREHILMFLPLRDAARASILSTNWRNMWMDLPTLVFDENFGNQEENSVDKVMFDVCTVLLLHRGPLKEFSLSIPVLRNYPDQL DQILMFLKNNKRSIESLTIKEEGCYPYEKYKLSRRLVSFSQLKTLRLSDCKVKSTPDEFRGFVNLTVLGLKNVVFADSGDSSLVWRFAFSLLSYLTLDNC IVKTPSWNSSHSIVIEAPRLSCFHLAGEFARLKFKHTPVLQKATLDRKYYTPVAVNSAFLDIWGGLAAVESLSVSGRFCEYLEHSVEESNGLSPLEMLRH LTYRNVCLSRQSYVDTVLVMITSSPNLQRLEIIMEDNSGSVPNLSFHKGQTEFELSRLTRVEVKKLKGAEHELDFINWLLNSCPALDIMKIKMSSKLSDS EKIMILTELNGFARASPRALLEITMREGIDVSNICFHGPSKFELLRLETVEVKELKSTEHELGFNKWLLSSSPALDIMKNQPVLVFIRCRKDTDCSRVER NLREPQPERY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10004852 [exp]	0	1
					Lus10005485 [exp]	201.1	0.4487

Compare expression of checked genes

Lus10004852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.