Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015828 [exp] 172 / 5e-53 ND / Lus10004852 [exp] 145 / 4e-39 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 131 / 2e-34 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10003016 [exp] 109 / 9e-27 AT1G13570 81 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10011048 [exp] 100 / 2e-23 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10020635 [exp] 89 / 1e-21 AT4G14103 57 / 1e-10 F-box/RNI-like superfamily protein (.1.2) Lus10020634 [exp] 89 / 1e-21 AT4G14103 57 / 1e-10 F-box/RNI-like superfamily protein (.1.2) Lus10004849 [exp] 71 / 7e-14 ND 41 / 6e-04 Lus10029077 [exp] 68 / 2e-12 AT1G13570 82 / 1e-16 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134200 [exp] 45 / 6e-05 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004853 pacid=23157150 polypeptide=Lus10004853 locus=Lus10004853.g ID=Lus10004853.BGIv1.0 annot-version=v1.0 ATGCAGCAAAGTGCAGTGCCCTGTCAAGTGAATGGAAGGACTTATTATGTCCCCAGTCTTGTCCTCGACAAAGAATTCGGAGCAGAAGGAAGGACAGATT CACAACTAATGTCGGACATTCGAAGAGTTTTCCAGCTTCACCGCGGACCATTAAAACACTTCTCATATTCGCTACTCTTCACACTGCACGATAACACCAA TCAGACCCTGCAATTACTTCCCCGAAAACAAACTATCGAGAGTCTAACCCTAGAATACTGCTACTACGGAATTGACATGTCGAGGCTTTCGCTGTTTTCG AAGCTCCAAACGTTAAGCTTGCATAGTTGTAGAATCGCATCCTCCTCTGCTGTTTTGTTCGAGCTTTTCAGTAATCTCACTGTGCTCGACCTTCGATCTG TAGCATTCCAATTGCAGGAGTTGAGATTCAGATTTCCGTCGCTTGCCACTTTGATATTGGATAGTTGCTACCTGTCTCTTCCACGGGCTTGGATCTTGAT CGAAGAAGCTCCAAAACTTAGTCGCTTATACTTGGATGGAAACATGAGCCCATCCGATTCAACTTACCTGGCAACAAAAGAGGCTCAATACATTGAAGGC AATAATAATGATGAGAAGCCATGGAAGAAGCTGAAGCACATGAGGGTAGAGGGTTTGGATATGAGTCGAACGAGTCATGCTTGTGGGGTTCTTCGTATGA TTGACAGTTCTCCGAATTTGCAACATCTTGCAATAATCATGATGGACTGTGTATATCGTTGTTGGCTTGACACGAAGAGTTCCGATGACATTAAAGCTCT GGAGATGATGAAATCTGAAGTCGATCCTTCGAAACTCGGACAGCCGAAGAGGATTGAGATGGAGAAGGTCAGAGGTACGGATGATGAACTGACTCTGATT AGCTGGCTGTTGAAGTCAACTCCAGCACTTGAAGAGATGAAAATCAGATTTCCCACTACTTATGAGCTATTCCACGGTGAGAAATCGATGGTTGTGAATT CGGTGGACCGGTTTCAAAGGGCTTCAAGAACAGCACAAATTCTTATTATTTAG
AA sequence Show only first row Show all	>Lus10004853 pacid=23157150 polypeptide=Lus10004853 locus=Lus10004853.g ID=Lus10004853.BGIv1.0 annot-version=v1.0 MQQSAVPCQVNGRTYYVPSLVLDKEFGAEGRTDSQLMSDIRRVFQLHRGPLKHFSYSLLFTLHDNTNQTLQLLPRKQTIESLTLEYCYYGIDMSRLSLFS KLQTLSLHSCRIASSSAVLFELFSNLTVLDLRSVAFQLQELRFRFPSLATLILDSCYLSLPRAWILIEEAPKLSRLYLDGNMSPSDSTYLATKEAQYIEG NNNDEKPWKKLKHMRVEGLDMSRTSHACGVLRMIDSSPNLQHLAIIMMDCVYRCWLDTKSSDDIKALEMMKSEVDPSKLGQPKRIEMEKVRGTDDELTLI SWLLKSTPALEEMKIRFPTTYELFHGEKSMVVNSVDRFQRASRTAQILII

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004853 [exp]	0	1
AT1G04670			unknown protein		Lus10002298 [exp]	1.4	1.0000
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10005194 [exp]	2.8	1.0000
AT4G34540			NmrA-like negative transcripti...		Lus10012146 [exp]	5.2	1.0000
					Lus10000273 [exp]	7.7	1.0000
					Lus10027667 [exp]	8.0	1.0000
AT5G45840			Leucine-rich repeat protein ki...		Lus10029228 [exp]	8.7	0.7999
AT1G17930			Aminotransferase-like, plant m...		Lus10001981 [exp]	9.8	1.0000
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10042395 [exp]	10.2	0.7935
AT2G25940		ALPHAVPE, ALPHA...	alpha-vacuolar processing enzy...		Lus10033344 [exp]	10.4	1.0000
					Lus10015682 [exp]	10.6	1.0000

Compare expression of checked genes

Lus10004853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.