Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02335 113 / 4e-31 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT1G18980 108 / 2e-29 RmlC-like cupins superfamily protein (.1) AT1G09560 107 / 9e-29 GLP5 germin-like protein 5 (.1) AT1G18970 105 / 4e-28 GLP4 germin-like protein 4 (.1) AT4G14630 102 / 5e-27 GLP9 germin-like protein 9 (.1) AT5G26700 99 / 2e-25 RmlC-like cupins superfamily protein (.1) AT5G38910 98 / 4e-25 RmlC-like cupins superfamily protein (.1) AT3G62020 98 / 4e-25 GLP10 germin-like protein 10 (.1.2) AT5G39110 97 / 5e-25 RmlC-like cupins superfamily protein (.1) AT3G10080 97 / 8e-25 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004856 [exp] 343 / 8e-122 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004854 [exp] 326 / 6e-115 AT1G02335 137 / 2e-40 germin-like protein subfamily 2 member 2 precursor (.1) Lus10020632 [exp] 310 / 4e-109 AT1G02335 129 / 1e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10020631 [exp] 214 / 4e-71 AT3G10080 132 / 7e-39 RmlC-like cupins superfamily protein (.1) Lus10004857 [exp] 209 / 7e-69 AT1G02335 140 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004858 [exp] 193 / 2e-62 AT1G02335 123 / 7e-35 germin-like protein subfamily 2 member 2 precursor (.1) Lus10034191 [exp] 192 / 4e-62 AT1G18970 136 / 4e-40 germin-like protein 4 (.1) Lus10043393 [exp] 169 / 2e-53 AT1G18970 123 / 3e-35 germin-like protein 4 (.1) Lus10030047 [exp] 108 / 2e-29 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157100 [exp] 260 / 5e-89 AT1G09560 105 / 3e-28 germin-like protein 5 (.1) Potri.004G194600 [exp] 251 / 2e-85 AT3G62020 129 / 4e-37 germin-like protein 10 (.1.2) Potri.010G240700 [exp] 215 / 4e-71 AT1G02335 141 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Potri.010G240600 [exp] 213 / 2e-70 AT3G62020 112 / 3e-31 germin-like protein 10 (.1.2) Potri.008G016700 [exp] 209 / 4e-69 AT1G18980 122 / 6e-35 RmlC-like cupins superfamily protein (.1) Potri.008G084300 [exp] 204 / 5e-67 AT1G02335 147 / 3e-44 germin-like protein subfamily 2 member 2 precursor (.1) Potri.010G240500 [exp] 203 / 1e-66 AT3G04200 123 / 5e-35 RmlC-like cupins superfamily protein (.1) Potri.013G116500 [exp] 177 / 2e-56 AT1G18970 70 / 1e-14 germin-like protein 4 (.1) Potri.001G465100 [exp] 114 / 1e-31 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.013G000500 [exp] 111 / 2e-30 AT1G09560 311 / 1e-108 germin-like protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10004855 pacid=23157191 polypeptide=Lus10004855 locus=Lus10004855.g ID=Lus10004855.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCAACTTCCACAATGAAGCTCCTTTTCCTAATCATAGCTTCTTTTGCCTCAATCCAAATGGCGATTTCCGGCGATCCGGATATCCTTACCG ACTTCGTAGCCCCACCAAATACTGTTATTGATGGTTCGTTCTTCACTTTCAGAGGATTCCAGTTCCTAGTCAATGGCACGCAGCTGTCTCCTACGTTCAA AGTTGTGAAGGCAACTAAGGCTGAGTTCCCTGCATTGGACGGGCAGAGTGTCTCGTATGCTACGCTCTTGTTCCCATCTGGGACGACCAACCCACCTCAC ACCCATCCTCGCGCCTCTGAGCTCCTCTTCGTCCTTGATGGGTCGCTCCAGGTTGGATTTGTCGACACCACCAACAAGCTCTTCACCCAAACATTGCAGG TGGGTGACATGTTCGTATTCCCCAAGGGACTTGTTCACTTCCAATACAACGCCGGGAATGGTACCGCAATAGCTATCTCCGCATTCGGGAGTGCGAGTGC AGGAACAGTGTCGCTTCCCGGGACACTCTTCGCGACCAACATCGATGACACCGTATTGGCTAAGTCTTTCAAGACTGATGTCTCTGTTATTCAAGGTCTC AAGGCTGGCCTAAAGGCCTAG
AA sequence Show only first row Show all	>Lus10004855 pacid=23157191 polypeptide=Lus10004855 locus=Lus10004855.g ID=Lus10004855.BGIv1.0 annot-version=v1.0 MASPTSTMKLLFLIIASFASIQMAISGDPDILTDFVAPPNTVIDGSFFTFRGFQFLVNGTQLSPTFKVVKATKAEFPALDGQSVSYATLLFPSGTTNPPH THPRASELLFVLDGSLQVGFVDTTNKLFTQTLQVGDMFVFPKGLVHFQYNAGNGTAIAISAFGSASAGTVSLPGTLFATNIDDTVLAKSFKTDVSVIQGL KAGLKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004855 [exp]	0	1
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	3.9	0.8835
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10006333 [exp]	4.4	0.7631
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	5.5	0.8835
AT5G27750			F-box/FBD-like domains contain...		Lus10035326 [exp]	5.6	0.6388
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10004237 [exp]	5.8	0.8019
					Lus10033096 [exp]	6.7	0.8835
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10023434 [exp]	6.8	0.6920
					Lus10017410 [exp]	7.3	0.7925
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	7.7	0.8835
					Lus10005203 [exp]	8.1	0.6942

Compare expression of checked genes

Lus10004855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.