Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02335 128 / 5e-37 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT3G04200 121 / 4e-34 RmlC-like cupins superfamily protein (.1) AT1G18980 119 / 2e-33 RmlC-like cupins superfamily protein (.1) AT1G09560 119 / 3e-33 GLP5 germin-like protein 5 (.1) AT3G05950 117 / 9e-33 RmlC-like cupins superfamily protein (.1) AT1G18970 116 / 2e-32 GLP4 germin-like protein 4 (.1) AT4G14630 113 / 3e-31 GLP9 germin-like protein 9 (.1) AT3G10080 112 / 7e-31 RmlC-like cupins superfamily protein (.1) AT3G62020 112 / 1e-30 GLP10 germin-like protein 10 (.1.2) AT5G26700 111 / 2e-30 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004855 [exp] 347 / 3e-123 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10020632 [exp] 329 / 1e-116 AT1G02335 129 / 1e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004854 [exp] 317 / 1e-111 AT1G02335 137 / 2e-40 germin-like protein subfamily 2 member 2 precursor (.1) Lus10020631 [exp] 243 / 2e-82 AT3G10080 132 / 7e-39 RmlC-like cupins superfamily protein (.1) Lus10004857 [exp] 238 / 3e-80 AT1G02335 140 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004858 [exp] 213 / 3e-70 AT1G02335 123 / 7e-35 germin-like protein subfamily 2 member 2 precursor (.1) Lus10034191 [exp] 207 / 5e-68 AT1G18970 136 / 4e-40 germin-like protein 4 (.1) Lus10043393 [exp] 194 / 4e-63 AT1G18970 123 / 3e-35 germin-like protein 4 (.1) Lus10030047 [exp] 127 / 1e-36 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G194600 [exp] 276 / 3e-95 AT3G62020 129 / 4e-37 germin-like protein 10 (.1.2) Potri.009G157100 [exp] 275 / 9e-95 AT1G09560 105 / 3e-28 germin-like protein 5 (.1) Potri.010G240700 [exp] 241 / 1e-81 AT1G02335 141 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Potri.010G240600 [exp] 232 / 5e-78 AT3G62020 112 / 3e-31 germin-like protein 10 (.1.2) Potri.008G016700 [exp] 229 / 1e-76 AT1G18980 122 / 6e-35 RmlC-like cupins superfamily protein (.1) Potri.008G084300 [exp] 228 / 4e-76 AT1G02335 147 / 3e-44 germin-like protein subfamily 2 member 2 precursor (.1) Potri.010G240500 [exp] 219 / 5e-73 AT3G04200 123 / 5e-35 RmlC-like cupins superfamily protein (.1) Potri.013G116500 [exp] 198 / 8e-65 AT1G18970 70 / 1e-14 germin-like protein 4 (.1) Potri.001G465100 [exp] 134 / 2e-39 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 129 / 2e-37 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10004856 pacid=23157146 polypeptide=Lus10004856 locus=Lus10004856.g ID=Lus10004856.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCAACTTCCACAATGAAGCTCCTTTTCCTAATCATAGCTTCCTTTGCCTCAATCCAAATTGCGATTTCTGGCGATCCGGATATCCTTACCG ACTTTGTAGCCCCACCAAACGCTAATAATCTCGATGGTTCGTTCTTCACATTCAAAGGATTTCAGTTCCTAGTCAACGGCACGGAGTTCCCTTCTGCATT CAAAGTTGTGAAGGCGAGTAAGGCTGAGTTCCCCGCGCTCGATGGGCAGAGCGTCTCTTACGCTACACTCTTGTTCCCATCGGGGACGACCAACCCACCT CATACCCACCCTCGCGCCTCTGAGCTCCTCTTCGTCCTTGATGGGTCCCTCCAGGTTGGATTCGTTGATACCACCAACAAGCTCTTCACTCAAACACTGC AGGTGGGTGACATGTTCGTATTTCCCAAGGGACTTGTTCACTTCCAATACAACGCCGGGAACGGTAATGCGATAGCTCTCTCTGGATTCGGGAGTGCTAG CGCTGGAACCGTGTCGCTTCCCGCGACACTCTTCTCGACCAACATTGACGACACCGTATTGGCCAAGTCTTTCAAGACTGATGTCTCTGTTATCCAAGGT CTCAAGGCTGGCCTAAAGGCCTAG
AA sequence Show only first row Show all	>Lus10004856 pacid=23157146 polypeptide=Lus10004856 locus=Lus10004856.g ID=Lus10004856.BGIv1.0 annot-version=v1.0 MASPTSTMKLLFLIIASFASIQIAISGDPDILTDFVAPPNANNLDGSFFTFKGFQFLVNGTEFPSAFKVVKASKAEFPALDGQSVSYATLLFPSGTTNPP HTHPRASELLFVLDGSLQVGFVDTTNKLFTQTLQVGDMFVFPKGLVHFQYNAGNGNAIALSGFGSASAGTVSLPATLFSTNIDDTVLAKSFKTDVSVIQG LKAGLKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	0	1
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	1.0	1.0000
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	1.4	1.0000
					Lus10039432 [exp]	1.7	1.0000
					Lus10002332 [exp]	2.0	1.0000
AT3G05950			RmlC-like cupins superfamily p...		Lus10023351 [exp]	3.2	1.0000
					Lus10030331 [exp]	3.5	0.9864
AT1G17930			Aminotransferase-like, plant m...		Lus10031075 [exp]	3.5	1.0000
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10033189 [exp]	3.7	1.0000
AT4G35500			Protein kinase superfamily pro...		Lus10035984 [exp]	3.7	0.9586
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10033628 [exp]	4.0	1.0000

Compare expression of checked genes

Lus10004856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.