Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02335 130 / 7e-38 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT1G18970 123 / 2e-35 GLP4 germin-like protein 4 (.1) AT3G10080 120 / 4e-34 RmlC-like cupins superfamily protein (.1) AT1G09560 120 / 5e-34 GLP5 germin-like protein 5 (.1) AT1G18980 119 / 1e-33 RmlC-like cupins superfamily protein (.1) AT3G04200 118 / 3e-33 RmlC-like cupins superfamily protein (.1) AT3G05950 115 / 4e-32 RmlC-like cupins superfamily protein (.1) AT5G39110 113 / 2e-31 RmlC-like cupins superfamily protein (.1) AT5G39150 113 / 2e-31 RmlC-like cupins superfamily protein (.1) AT5G39120 113 / 2e-31 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020631 [exp] 322 / 5e-114 AT3G10080 132 / 7e-39 RmlC-like cupins superfamily protein (.1) Lus10004856 [exp] 222 / 4e-74 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004854 [exp] 221 / 6e-74 AT1G02335 137 / 2e-40 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004855 [exp] 221 / 1e-73 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10020632 [exp] 218 / 1e-72 AT1G02335 129 / 1e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10034191 [exp] 184 / 3e-59 AT1G18970 136 / 4e-40 germin-like protein 4 (.1) Lus10004858 [exp] 184 / 3e-59 AT1G02335 123 / 7e-35 germin-like protein subfamily 2 member 2 precursor (.1) Lus10043393 [exp] 169 / 1e-53 AT1G18970 123 / 3e-35 germin-like protein 4 (.1) Lus10009254 [exp] 116 / 2e-32 AT3G62020 306 / 1e-106 germin-like protein 10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G194600 [exp] 229 / 6e-77 AT3G62020 129 / 4e-37 germin-like protein 10 (.1.2) Potri.009G157100 [exp] 225 / 1e-75 AT1G09560 105 / 3e-28 germin-like protein 5 (.1) Potri.008G016700 [exp] 220 / 9e-74 AT1G18980 122 / 6e-35 RmlC-like cupins superfamily protein (.1) Potri.010G240500 [exp] 220 / 2e-73 AT3G04200 123 / 5e-35 RmlC-like cupins superfamily protein (.1) Potri.010G240700 [exp] 218 / 6e-73 AT1G02335 141 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Potri.008G084300 [exp] 217 / 2e-72 AT1G02335 147 / 3e-44 germin-like protein subfamily 2 member 2 precursor (.1) Potri.010G240600 [exp] 207 / 2e-68 AT3G62020 112 / 3e-31 germin-like protein 10 (.1.2) Potri.013G116500 [exp] 159 / 9e-50 AT1G18970 70 / 1e-14 germin-like protein 4 (.1) Potri.013G000500 [exp] 123 / 2e-35 AT1G09560 311 / 1e-108 germin-like protein 5 (.1) Potri.002G184900 [exp] 118 / 2e-33 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10004857 pacid=23157148 polypeptide=Lus10004857 locus=Lus10004857.g ID=Lus10004857.BGIv1.0 annot-version=v1.0 ATGGCTGCAGATCCAGACATCCTCACAGACTTCATCCTCCCACAAAACTCAACAACGAACACCACAAGCCAGTTCTTCACATTCTCCGGCATGAGGCCAA TCTTCCATCAAAGACCACAAGGCTTCACCATTTCCAAGGCCAGCCTAGCCCAATTCCCAGCTCTCGAAGGCCAGAGCGTCTCCTACGCTGTCCTCCAATT CCCTTCAGGTACCACCAACCCTCCACACATCCACCCTCGAGCATCCGAGCTGCTCTTCCTCGCCCGCGGCAGCCTCCAAGTAGGGTTCGTTGACACCGCC AACAAGCTCTACACTCAGACTCTGGAGCTCGGTGACATGTTCGTGTTCCCTAAGGGTCTAGTCCACTTCCAGCACAATGTTGGGAAAGTTACTGCAGTTG CATTCTCTGCCTTTGGAAGTGCCAATGCTGGAACTGTTTCTCTCCCACCTACTCTGTTCACCAGTGGGATTGATGATGATGTTTTGGTTAAAGGGTTCAA GAGCGATGTCACTACTATTCAGTCTCTCAAGGCTGGCCTTTCTGCTAAGAAATGA
AA sequence Show only first row Show all	>Lus10004857 pacid=23157148 polypeptide=Lus10004857 locus=Lus10004857.g ID=Lus10004857.BGIv1.0 annot-version=v1.0 MAADPDILTDFILPQNSTTNTTSQFFTFSGMRPIFHQRPQGFTISKASLAQFPALEGQSVSYAVLQFPSGTTNPPHIHPRASELLFLARGSLQVGFVDTA NKLYTQTLELGDMFVFPKGLVHFQHNVGKVTAVAFSAFGSANAGTVSLPPTLFTSGIDDDVLVKGFKSDVTTIQSLKAGLSAKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004857 [exp]	0	1
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003704 [exp]	1.4	0.8906
AT1G17930			Aminotransferase-like, plant m...		Lus10011644 [exp]	4.1	0.8950
					Lus10005297 [exp]	7.9	0.8561
AT4G24204			RING/U-box superfamily protein...		Lus10010392 [exp]	8.4	0.7469
					Lus10013260 [exp]	9.2	0.8561
AT5G54010			UDP-Glycosyltransferase superf...		Lus10003154 [exp]	9.5	0.7610
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10001905 [exp]	9.9	0.8554
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	10.2	0.8561
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	11.2	0.8561
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036704 [exp]	12.0	0.8347

Compare expression of checked genes

Lus10004857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.