Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02335 117 / 1e-32 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT1G09560 114 / 2e-31 GLP5 germin-like protein 5 (.1) AT3G04200 112 / 1e-30 RmlC-like cupins superfamily protein (.1) AT3G05950 110 / 7e-30 RmlC-like cupins superfamily protein (.1) AT4G14630 108 / 2e-29 GLP9 germin-like protein 9 (.1) AT3G10080 104 / 1e-27 RmlC-like cupins superfamily protein (.1) AT5G39120 102 / 8e-27 RmlC-like cupins superfamily protein (.1) AT5G39150 102 / 8e-27 RmlC-like cupins superfamily protein (.1) AT5G39110 102 / 9e-27 RmlC-like cupins superfamily protein (.1) AT5G39130 101 / 2e-26 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004855 [exp] 228 / 3e-76 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10020632 [exp] 224 / 6e-75 AT1G02335 129 / 1e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004856 [exp] 224 / 2e-74 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004854 [exp] 223 / 4e-74 AT1G02335 137 / 2e-40 germin-like protein subfamily 2 member 2 precursor (.1) Lus10020631 [exp] 209 / 7e-69 AT3G10080 132 / 7e-39 RmlC-like cupins superfamily protein (.1) Lus10004857 [exp] 208 / 1e-68 AT1G02335 140 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Lus10034191 [exp] 184 / 6e-59 AT1G18970 136 / 4e-40 germin-like protein 4 (.1) Lus10043393 [exp] 167 / 3e-52 AT1G18970 123 / 3e-35 germin-like protein 4 (.1) Lus10035280 [exp] 117 / 2e-32 AT3G05950 252 / 2e-85 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G194600 [exp] 213 / 2e-70 AT3G62020 129 / 4e-37 germin-like protein 10 (.1.2) Potri.010G240700 [exp] 213 / 3e-70 AT1G02335 141 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Potri.009G157100 [exp] 213 / 4e-70 AT1G09560 105 / 3e-28 germin-like protein 5 (.1) Potri.008G084300 [exp] 210 / 5e-69 AT1G02335 147 / 3e-44 germin-like protein subfamily 2 member 2 precursor (.1) Potri.010G240600 [exp] 208 / 2e-68 AT3G62020 112 / 3e-31 germin-like protein 10 (.1.2) Potri.008G016700 [exp] 206 / 9e-68 AT1G18980 122 / 6e-35 RmlC-like cupins superfamily protein (.1) Potri.010G240500 [exp] 204 / 1e-66 AT3G04200 123 / 5e-35 RmlC-like cupins superfamily protein (.1) Potri.013G116500 [exp] 147 / 2e-44 AT1G18970 70 / 1e-14 germin-like protein 4 (.1) Potri.011G163800 [exp] 110 / 6e-30 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 108 / 2e-29 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10004858 pacid=23157170 polypeptide=Lus10004858 locus=Lus10004858.g ID=Lus10004858.BGIv1.0 annot-version=v1.0 ATGGCCTATTTCCCTTCTAATCATGCAGCTTTCTTCCTGCTAGCATTATGTCTTCTCCCAACATTGACCATGGCTGCAGACCCAGACATTCTCACAGACT TCATCCTCCCACCAAACACAACCATCCCAGATGCATCATTCTTTACATTCACCAACCTACGCCCTTTCTTCGCCAACGGCCAAATTCTAGCCCCGACGAA CTTCACTGCCTTGGATGCAACAATGTCAGAGTTTCCTGCACTCAATGGCCAGAGTGTTTCCTCTGCTTACCTTATTTTCCCTTCAGGAACTTCCAACCCT CCTCACACTCATCCTCGATCGGCCGAGCTTCTGCTCCTCGTCCAGGGATCGCTCGAGGTTGGATTCGTTGACACGACGAACAAGCTCTATATGCAGACAC TGCAGGTTGGTGACATGTTCGTGTTCCCTAAAGGACTTGTTCACTTCCAGTACTTCAGCAAGAATGGTGATGATTTTGCTATTGCTGTTTCGGGGTTTGG GAGCGCGAATCCGGGGACTATTTCAGTTGCTAAGAGCTTGTTTGGTGGTGAGATTGATGATGATGATGATGCCTTGTTGGCCAAGTCTTTCAAGACTGAC GTTGGTACCATTCAAGCCCTCAAGGCTGCTCTCAAGGGTTGA
AA sequence Show only first row Show all	>Lus10004858 pacid=23157170 polypeptide=Lus10004858 locus=Lus10004858.g ID=Lus10004858.BGIv1.0 annot-version=v1.0 MAYFPSNHAAFFLLALCLLPTLTMAADPDILTDFILPPNTTIPDASFFTFTNLRPFFANGQILAPTNFTALDATMSEFPALNGQSVSSAYLIFPSGTSNP PHTHPRSAELLLLVQGSLEVGFVDTTNKLYMQTLQVGDMFVFPKGLVHFQYFSKNGDDFAIAVSGFGSANPGTISVAKSLFGGEIDDDDDALLAKSFKTD VGTIQALKAALKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004858 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Lus10026391 [exp]	1.0	0.9765
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10000173 [exp]	5.7	0.9663
AT4G31290			ChaC-like family protein (.1)		Lus10020181 [exp]	9.2	0.9630
					Lus10011653 [exp]	11.2	0.9580
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10014673 [exp]	13.0	0.9601
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Lus10013887 [exp]	15.6	0.9397
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10024676 [exp]	15.7	0.9604
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10009037 [exp]	15.7	0.9458
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10036800 [exp]	15.9	0.9517
					Lus10032742 [exp]	17.2	0.9520

Compare expression of checked genes

Lus10004858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.