Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22410 305 / 3e-103 RHS18 root hair specific 18 (.1) AT5G17820 287 / 3e-96 Peroxidase superfamily protein (.1) AT3G03670 270 / 2e-89 Peroxidase superfamily protein (.1) AT4G26010 270 / 2e-89 Peroxidase superfamily protein (.1) AT5G24070 257 / 3e-84 Peroxidase superfamily protein (.1) AT2G43480 243 / 9e-79 Peroxidase superfamily protein (.1) AT5G06730 239 / 6e-77 Peroxidase superfamily protein (.1) AT3G32980 238 / 2e-76 Peroxidase superfamily protein (.1) AT5G06720 237 / 3e-76 ATPA2 peroxidase 2 (.1) AT2G41480 237 / 3e-76 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032511 [exp] 357 / 1e-123 AT5G22410 302 / 8e-102 root hair specific 18 (.1) Lus10043010 [exp] 355 / 1e-122 AT5G22410 300 / 9e-101 root hair specific 18 (.1) Lus10005679 [exp] 291 / 1e-97 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10001324 [exp] 278 / 3e-92 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10013631 [exp] 273 / 2e-90 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10020312 [exp] 286 / 3e-90 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10018375 [exp] 256 / 8e-84 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10005681 [exp] 241 / 5e-78 AT5G17820 294 / 9e-99 Peroxidase superfamily protein (.1) Lus10004804 [exp] 240 / 2e-77 AT5G24070 412 / 1e-144 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G110200 [exp] 374 / 2e-130 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.001G218450 [exp] 363 / 1e-125 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.001G218500 [exp] 363 / 1e-125 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.013G066800 [exp] 280 / 9e-93 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 241 / 4e-78 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 240 / 9e-78 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 238 / 5e-77 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.007G132800 [exp] 238 / 9e-77 AT2G43480 446 / 2e-158 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 237 / 1e-76 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.016G125000 [exp] 237 / 1e-76 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10004859 pacid=23157153 polypeptide=Lus10004859 locus=Lus10004859.g ID=Lus10004859.BGIv1.0 annot-version=v1.0 ATGGGTCTCTTATTGTTGGGCCTAGCAGCGGACAAGGCCCAAGCCCAGCTCCAGTTCGGGTTCTACAAGGGGAAATGCAGAGCCACCAACGTGGACGTGG AGTCCACCGTCCGGAGCATCGTGTCGGAGAAGTACCAGTCCGACAAGTCCATCGTCGCTGCTCTGCTCCGCATGCAGTTCCACGACTGCTTTGTCCAAGG TTGTGATGCATCGATACTCCTAGACGGGACAACCAGCGAGAAGACTGCGCCGCCGAATCTAAGTGTGAGGGGCTACGAGATCATAGACGCGGTGAAGACT GCACTAGAAGGGTCATGTGGACCGCAAGTCGTTTCTTGCGCTGACATCATCGTCATGGCTACTAGGGATGCTGTATCACTGGCGAAAGGCGGGTTTTACA ACGTGCAAACCGGGAGGAGGGACGGGTTGGTGTCACAAGCTAAAAATGTAGCTCTTCCGGCTCCGAATGTCCCGATCCCTCAAGCCATTGGCATGTTTGC TAGGAAGAACCTCTCCCCAATTGACATGGTTTATCTTCTCGGAGGACACACGGTTGGTGTATCACACTGTGCATTTTTCCAAGACCGTCTGTACAACTTT AAAAACACGGGACGACCCGACCCGAGCATGAACACAACCCTACTCAACTCCCTCAGGCAGACTTGCCCACCCAACTCGAACTCGGCCAACACCACGAACT TGGACCAGAACCCGACCAGCTCTCTCGTGGTCGACAATTCCTACTACCAGCAACTCTTGAGACGTAATGGTATACTCCAGGTCGACCAAGACCTGGCTTC CAACCCTCTTACCGGGTTCATTGTGTCGGCAATCGCGAGTCGGGCTGATTTCTCGGCCCGGTTTGGGCAGGCCATGGTCAACTTGGGTGCTGTGGATGTG CTCACTGGTCAGCAAGGGCAGATCAGGAAGTCTTGCCGGGCTGTTAACAAATAA
AA sequence Show only first row Show all	>Lus10004859 pacid=23157153 polypeptide=Lus10004859 locus=Lus10004859.g ID=Lus10004859.BGIv1.0 annot-version=v1.0 MGLLLLGLAADKAQAQLQFGFYKGKCRATNVDVESTVRSIVSEKYQSDKSIVAALLRMQFHDCFVQGCDASILLDGTTSEKTAPPNLSVRGYEIIDAVKT ALEGSCGPQVVSCADIIVMATRDAVSLAKGGFYNVQTGRRDGLVSQAKNVALPAPNVPIPQAIGMFARKNLSPIDMVYLLGGHTVGVSHCAFFQDRLYNF KNTGRPDPSMNTTLLNSLRQTCPPNSNSANTTNLDQNPTSSLVVDNSYYQQLLRRNGILQVDQDLASNPLTGFIVSAIASRADFSARFGQAMVNLGAVDV LTGQQGQIRKSCRAVNK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10004859 [exp]	0	1
AT1G30870			Peroxidase superfamily protein...		Lus10038393 [exp]	1.0	0.9748
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10005539 [exp]	1.7	0.9440
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10033399 [exp]	2.0	0.9592
AT1G11920			Pectin lyase-like superfamily ...		Lus10011258 [exp]	3.5	0.8878
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10024478 [exp]	4.0	0.9101
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10034859 [exp]	4.6	0.7837
AT1G30870			Peroxidase superfamily protein...		Lus10001228 [exp]	5.5	0.9337
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10040948 [exp]	5.7	0.9365
AT1G63450		RHS8	root hair specific 8 (.1)		Lus10000604 [exp]	6.9	0.9114
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10041926 [exp]	7.3	0.9025

Compare expression of checked genes

Lus10004859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.